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GT15850

CSHL Arabidopsis genetrap mutant lines

Original: GT15850

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15850

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20142898 [Map]; Strand: c
      • AT1G53935.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -32; Region: promoter
      • AT1G53940.1 - [+] show detail - GDSL-motif lipase 2
        Distance: -381; Region: promoter
    Flanking Genome Sequence: GT15850 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCG TGGCCGTATT 
    GTATGCAACA ATAACTGCAC GTACGCAATG ACCACAATGA TTGGATTGCT 
    CAACAGCTCA AAATCCTTAA CTTTTTCACA ACACTTGCTT TATAAGGTTT 
    CAGACAGTAT AGGTTAAAAT AAGAACAAAC GACAACAACA TAAAATTCAA 
    AACAAATGGG CTGTTAGAAG ATCTATTTTA CAACACTATT TCTTAGAACA 
    ACTTGACCAC AAGAAAAAAA AAACAATTCT CATCAATCAA CCAATTTTAT 
    TGAAATAAAC TATTGAAAAA TTTCAAAATT TTTTTAAAAC CAAAACCGGA 
    GCCCTTGCTT TTTTTTGAAG ACCAAAACAG ACCATTTGTT TTATATAAAC 
    CCTAAACGGT AATCCCAAAA ACCCACCTTT AAACATGGAA AACTCTCAAT 
    CAACTTTAAC CATCTTCTTG GCT

AT1G53935.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23180.1); Has 29 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53940.1

Model type
Protein coding
Short Description
GDSL-motif lipase 2
Curator Summary
Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance
Computational Description
GDSL-motif lipase 2 (GLIP2); FUNCTIONS IN: lipase activity, arylesterase activity, carboxylesterase activity; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, defense response to bacterium, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seedling, stem, cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL lipase 1 (TAIR:AT5G40990.1); Has 3238 Blast hits to 3145 proteins in 120 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 27; Plants - 3095; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR