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GT15851

CSHL Arabidopsis genetrap mutant lines

Original: GT15851

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15851

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1014254 [Map]; Strand: w
      • AT4G02300.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -1220; Region: intergenic
      • AT4G02310.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 426; Region: intergenic
    Flanking Genome Sequence: GT15851 - 3-prime edge
    ACCGACCGTT ACCGACCGTT TTCATCCCTA CATAACATAT AGATTTTCAA 
    CTTTTATAGA GTTAACATAT CATTAATGAG TGAACAGCTA TTGTATTGGT
    TTTAATTTGC TTCCGAATTC ATGAATAATT CTTGCATTCT CTGGTTGCAA
    CTTGAGCAAC TGATTGTCCA AGCTGGAGGG AGAATCCTTC AGGTGGATAT
    ATAAACTAGA CTGGTCTGAG AACAGAACAA CAAGATGATG ATGATGATCC
    AGTTGCATTC CTTAACGGTA ATACTCGGAT TTGTTGTTTA GAAAGACAGA
    ACAAAAAGCT ATTTATAATG TGTGGGTAAA GAGAGGTGAT TGTTGTTCAT
    AGATCAGTAC AATGTATCTT TGATATCCTC TATTTTGACT CTCAAATCTT
    TGATAGTGAT CTTATCTGAA TAGTATGAAT TTGCATCTCA TAATTAAAAC
    CATATGAGCA AGAGCATATA TATA

AT4G02300.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02320.1); Has 2686 Blast hits to 2624 proteins in 317 species: Archae - 6; Bacteria - 574; Metazoa - 1; Fungi - 202; Plants - 1878; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02310.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44630.1); Has 627 Blast hits to 612 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR