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Mutant Lines
GT15859

GT15859

CSHL Arabidopsis genetrap mutant lines

Original: GT15859

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15859

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 1014271 [Map]; Strand: w
- AT4G02300.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
  Distance: -1237; Region: intergenic
- AT4G02310.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
  Distance: 409; Region: intergenic

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAT 
AACATATAGA TTTTCAACTT TTATAGAGTT AACATATCAT TAATGAGTGA 
ACAGCTATTG TATTGGTTTT AATTTGCTTC CGAATTCATG AATAATTCTT 
GCATTCTCTG GTTGCAGCTT GAGCAACTGA TTGTCCAAGC TGGTGGTAGA 
ATCCTTCAGG TGGATATATA AACTAGACTG GTCGAGAACA GAACAACAAG 
ATGATGATGA TGATCCAGTT GCATTCCTTA GCGGTAATAC TCGGATTTGT 
TGTTTAGAAA GAAAGAAAAA AAAGCTATTT AGAATGTGTG GGTAAAGAGA 
GGTGATTGTT GTTCATAGAT CAGTACGATG TATCTTTGAT ATCATCTATT 
TTGACTCTTA AATCTTTGAT AGTGATCTTA TCTGAATAGT ATGAATTTGC 
ATCTCATAAT TAAGACCATA TGAACAAGAG CATATATATA CAAACACAAG 
AATAATGCTA GAAACAGAAG CATCATAAGA AGCACAAAAT TTTCTTGCAG 
CAAGCCAGCA AGTAACACTT GATTCTAAGT CAGCAAGTCA TGATGCTCCT 
GAGACATGGA AGTGTTCAAC GATGCCAGAA ATGTAGCAAT CCATTTTCT

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 5539961 [Map]; Strand: w
  - AT3G16340.2 - [+] show detail - pleiotropic drug resistance 1
    Distance: 0; Region: exon1 (CDS)
  - AT3G16340.1 - [+] show detail - pleiotropic drug resistance 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT15859 - 5-prime edge
```
CCTACTTTCT CCCTGGTTAT CGAGAAGCCT AAGTAAGAGC TTAGGAGAGT 
TGTTAGCGAG TAATAGTAAT AACCATTTCT CAAGGAGAAG CGGTTCAACG 
ATAGATGATC ACGATGAGGA AGCTCTTAAA TGGGCTGCTC TCGAGAAACT 
TCCAACCTTT GCTCGTCTTC GTACCACTAT CATTCATCTC ACTCGA
```

AT3G16340.1

Model type: Protein coding
Short Description: pleiotropic drug resistance 1
Computational Description: pleiotropic drug resistance 1 (PDR1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 382062 Blast hits to 287791 proteins in 4008 species: Archae - 7336; Bacteria - 307356; Metazoa - 10132; Fungi - 7268; Plants - 6380; Viruses - 4; Other Eukaryotes - 43586 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G16340.2

Model type: Protein coding
Short Description: pleiotropic drug resistance 1
Computational Description: pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1).
Link: InterPro Scan - TAIR

AT4G02300.1

Model type: Protein coding
Short Description: Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description: Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02320.1); Has 2686 Blast hits to 2624 proteins in 317 species: Archae - 6; Bacteria - 574; Metazoa - 1; Fungi - 202; Plants - 1878; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02310.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44630.1); Has 627 Blast hits to 612 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR