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GT15886

CSHL Arabidopsis genetrap mutant lines

Original: GT15886

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15886

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19857488 [Map]; Strand: c
      • AT1G53240.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: -551; Region: promoter
      • AT1G53250.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT15886 - 3-prime edge 
    GGTAGAGGAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATTTGTGA 
    GTGCTTCTGC ATTCTCAAAC TCTTATCTCT TGTGATTTGA AATCATCTCT 
    GAAATCAAGG ATTTATAAAA ATCTATTTCT AATTTGATGA AAATTATGTA 
    GAAATTCATT GATTTATCGT TCAGGTACTG GTTGTTTGAT TTTATTTGAC 
    CTATTTTGAT TTCGATTTGG TCAAATACTG TTTTTGCAGA GGTTTATCAA 
    TGGAGATGAA ATGCACATTT CAATCAACTC GTGCTCCATT CCAATGCGCT 
    TGGTGGTTCC CAAATTCAAT CTATTGGACT CTCAAAGAAC CAATCGTTTT 
    GAAAATACCT AATTCACTTG CTTCTTTGAG GTCTATCAGA CACTTGGAGT 
    TGAAATCTGT AGGTTCATTG TCCACTCTGC GATTGAGATT CATAGGAAAG 
    AAGTCAATTC AAGTCTTTTG GAAGTGAAAG CTATGAACAA AGATACTGAA 
    GCTGATAGTG ATAGTGATAG GAAGATTAAA GAAGAGGAAA GGAGAAGGAA 
    GATTGGATTA GCTAATAGAG GAAAGGTGCC ATGGAACAAA GGGAGGAAAC 
    ACAGTGAAGG TAGAAGGATC TTTTCTTCGA TTTTCTGCAT TGTTTCTTCT 
    TTGAGGCTTT GTGTAGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19857429 [Map]; Strand: c
      • AT1G53240.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: -492; Region: promoter
      • AT1G53250.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT15886 - 5-prime edge 
    CCTACTTTCT CTCTGTCTAC AATTTAGTGA CTACACGGCA CGGAGACGAA 
    CAGGAGACAA GAGAAAACTC TGAAAAGTTT CCTTTTATGG TTTCTCAAAC 
    GCGAAAGCCA TTGAAGAAGA AGAAGAAGAG TGCGCAGACA CGAAGAGAGA 
    GAGAGAGAGA GAGAGAGAGA GAGAGAGCGG GAGACACATA TAGGGGATAT 
    GAAACACTCT TGTGGGGCGT GTGTGGGCCT TCTCTTTATT TATCCCTTAA 
    ATTACTTTTC CCTCTATTTC AAAAAAAAAC ACCTCTTTTT TAGAGAGGCT 
    CTCTCTCTTT ACCTCTATAC ACGCGAGAGT GCCCCCAAGT GTGTTTTCTC 
    TTCGTGTATA TATTTATTTA TTTAGCGCGG TTTTTTTTTC TCTTTGATAT 
    GTGAGAGCTG GAGACCCCCA AAAATCTCGG TATATTTTTG CACCCCACTG 
    TGTGTAGATT TTTTTTCTCT AAAATCAAAC ACATTTTACA CGAAATCTCT 
    TAAATTTTAT TTTACAAAAC ACATCTGAGG GGTTTAAAGT AGAGGGGGGG 
    GGGTGTATAT CTCAGCGTGT GTCTCCCCCA TTTTTTTC

AT1G53240.1

Model type
Protein coding
Short Description
Lactate/malate dehydrogenase family protein
Computational Description
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT3G15020.1); Has 17502 Blast hits to 17499 proteins in 5422 species: Archae - 240; Bacteria - 12205; Metazoa - 1281; Fungi - 536; Plants - 649; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53250.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink).
Link
InterPro Scan - TAIR