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GT15892

CSHL Arabidopsis genetrap mutant lines

Original: GT15892

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15892

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 469972 [Map]; Strand: c
      • AT2G02000.1 - [+] show detail - glutamate decarboxylase 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT15892 - 3-prime edge
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCATCATGT TCTCGCGGCA 
    ATTATCCATC ACGTTGCGAT ATCCCTAAAC CAAACAAAAA GATTATTAGC
    TATTCTACAA AACCAAAACT TGTCAATTTA GGAACGTTTA ATCTTATGGA
    ATGTATTTAG TACATTCTTG GGTTTGAACT TTTGTAGTCA TAAAGTATAG
    TAACAACTTG TATATTATAC TAGTACGTAT ACGATTGGAT TTAGTAACGT
    TTTAGTTTCT TTATTGAGTT ATTATTTACC TCGAATCCAA GACGAATCAA
    CTGGTAGTAC TGAGCAATCA CTTGACTTGA CCCTGGTAAT ATACAAGAAT
    TAACAAAACA TTAATCTATA AATATATCTA AACTTTACAT AAGATATGGT
    AATGTACCTT TAGAAAAGTT GAGGGTAAAT GTGGGTTGAT CAGGCTCCCA
    AGATAATTGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 469900 [Map]; Strand: c
      • AT2G02000.1 - [+] show detail - glutamate decarboxylase 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT15892 - 5-prime edge
    ATCCTACTTT CTCCCTGATG GTACTAAGAC AAGTATTAGA GCAAACGGGA 
    CGTTTTAACA TCGTCTCCAA AGAAAACGGT GTTCCGTTAG TGGCGTTTTC
    TCTCAAAGAT AGTAGCCGCC ACAACGAGTT CGAGGTGGCC GAAATGCTTC
    GTCGCTTCGG CTGGATCGTT CCGGCCTACA CGATGCCTGC GGATGCGCAA
    CATGTCACGG TCCTTCGAGT TGTTATCCGA GAAGATTTCT CTCGAACCTT
    AGCTGAGAGA TTGGTAGCCG ATTTCGAGAA GGTTCTACAC GAGCTCGATA
    CGCTTCCCGC GAGGGTTCAC GCCAAGATGG CTAGTGGAAA AGTTAACGGT
    GTTAAGAAGA CGCCAGAGGA GACGCAAAGA GAAGTCACGG CCTACTGGAA
    GAAGTTTGTG GACACTAAGA CTGACAAGAA CGGCGTTCCG TTAGTAGCAA
    GTATTACCAA TCAATGATGG GCCAA

AT2G02000.1

Model type
Protein coding
Short Description
glutamate decarboxylase 3
Computational Description
glutamate decarboxylase 3 (GAD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 2817 Blast hits to 2814 proteins in 863 species: Archae - 192; Bacteria - 1666; Metazoa - 146; Fungi - 354; Plants - 282; Viruses - 7; Other Eukaryotes - 170 (source: NCBI BLink).
Link
InterPro Scan - TAIR