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GT15896

CSHL Arabidopsis genetrap mutant lines

Original: GT15896

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15896

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19659269 [Map]; Strand: w
      • AT1G52780.1 - [+] show detail - Protein of unknown function (DUF2921)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15896 - 3-prime edge 
    ACGGTAGAGG ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTGAC 
    GCCTATGTAT TTCTTGGTTC GATGTGGGAG ATCTAGATCT GTGACTGAGA 
    AAGAAACAAG ATTCATAGGC TTCGTCGACG AGTTTCTAAG TGTGTTCGTT 
    GAATCAAAAG GTAGAATCGG AGAATCACCA GAATCTTGAT TCCAATCTCC 
    GTATCGAAAA CCAAGATTCC TTTTTGATTT TCTAGGAGTT CTAGAGATAT 
    CTTCAAGCTT TAATTCAGAA GCTGAAGATA ACACTGATTT GCACTTTTTC 
    TTCACATCAT TGATACGATC GTAACTAATC TTAGGTGCGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19659331 [Map]; Strand: w
      • AT1G52780.1 - [+] show detail - Protein of unknown function (DUF2921)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15896 - 5-prime edge 
    TTCTCCCTGG GCGTCAATGG TGTTTTGCTT CTCGCGATCA CAATGTTTAG 
    CGAATTACCA AGCTTAAGAT CTTATGGGCT CCGTGAGTTT GAGTTATGGC 
    CAAGTCATAC TCAGCTTAAG ATCTCGTTTC AAGGGATTTA CGTTGAGAAT 
    GATGATGATG AAAGAGTTTT GTGTATGCTT GGTGAAACAA TGTTACCTTC 
    TCGTGATGAA TCTGATTCTT CTAATCCATG GAAATGGGTT AAAGAACATG 
    ACACGCCTCC TCTTTTACAA GATGATATGA TTCTGCTTCA TCTCACTCGA 
    C

AT1G52780.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF2921)
Computational Description
Protein of unknown function (DUF2921); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: cultured cell, callus, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2921 (InterPro:IPR021319); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2921) (TAIR:AT4G21700.1); Has 114 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR