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GT15904

CSHL Arabidopsis genetrap mutant lines

Original: GT15904

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15904

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269393 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15904 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCTC CCTACTCACA GTGACGGTGG 
    TTTCTACAGA TACATTGTTC CGCGGAGGCG ATAACATCGG CTGATGGAAA 
    TTATTGTTCC GCGCGGCGAG GACAACGCCG TTACTCTCGA GTTTGGAATC 
    AATTGCGTTT TCGATTGACT CGATGTGCTT CTGAATATCA TCGAATTGGC 
    GTCTGAATGT TTCCACTGCA ACTGAAAACG CAGCTAATTC GTCTATGGAT 
    TTCAAAAATT GAGGCTGCTT AGATTGACCG ATCGCAATGT CCATACTTGT 
    GGACTCTGTT TCGACAATCT TCGGTAATTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269463 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15904 - 5-prime edge 
    ACTTTCTCCC TGACTGTGAG CCAACCGTCT CAGGAGATTG TACCGGAGAC 
    GTCGAATAAA CCGGAGGGGG GACGTATGTG TGAGTTGATG TGTAGCAAAG 
    GTCTGCGTAA ATACATATAC GCGAATATCT CTGATCAAGC TAAGTTAATG 
    GAAGAGATTC CTTCAGCTTT GAAATTGGCC AAGGAGCCAG CGAAGTTTGT 
    ATTGGATTGT ATTGGCAAGT TTTACTTACA AGGGCGTAGA GCATTTACTA 
    AAGAGTCGCC TATGAGCTCT GCGAGACAAG TTTCGCTTCT TATACTGGAG 
    TCTTTTCTTC TAATGCCTGA TCGTGGTAAA GGGAAGGTGA AGATTGAGAG 
    TTGGATTAAA GATGAGGCGG AGACGGCTGC TGTTGCTTGG AGGAAAAGGT 
    TGATGACTGA AGGAGGATTA GCTGCGGCTG AGAAAATGGA TGCAAGGGGT 
    TTGCTTTTAC TAGTTGCTTG TTTTGGTGTT CCTTCAAACT TTAGGAGTAC 
    AGATTTGCTG GATTTGATAA GGATGAGTGG TTCGAATGAG ATTGCCGGTG 
    CTTTGAAGCG GTCACAGTTT CTTGTCCCTA TGGTCTCAGG TACCATATTC 
    TGTTCTCACT CGGTGAATTT CATTGCAAAG GTGGTTCCTT TTG

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR