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GT15915

CSHL Arabidopsis genetrap mutant lines

Original: GT15915

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15915

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30249503 [Map]; Strand: w
      • AT1G80460.2 - [+] show detail - Actin-like ATPase superfamily protein
        Distance: -198; Region: promoter
      • AT1G80460.1 - [+] show detail - Actin-like ATPase superfamily protein
        Distance: -250; Region: promoter
    Flanking Genome Sequence: GT15915 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAGTAAAATA TAGTAGCTTC AGACAAGTAG TACTAGGAAA ATAAATCAAC 
    TTAATAGAAG AACCAGATCT GTGAACGGAG AAAGGGACAT ATGAGTTTGT 
    CAAAGTCAAC GATAGAAACG GTTACAAGAA TATCCAATGA AAGAGAGCCA 
    CGTGGGAGAT GCAGCTGAAT TTAAGTAAGA ATGATCTCAT AATCTTGACC 
    ATCCACCAAT AAAAAGCTTA ATTAATACAT CATCATCCAA TCCGGTGGAG 
    TAAATGCGTA GATGGATAGA GAACGGTGAA GTTTCCAACA AAATCTCTGA 
    CTCTGATTCA GCTTTCTATA TTCAATCGTT CCCATTATCT CATTTTGTAG 
    TTTAGTTTTA TCCTCAACAA CCATCTTCTT CGTTATATTC CTTGAGATAA 
    CAACAAAGCA TCGTTCTTCA CCTTTACCAA AAAGATAAAA AAAAAGAAAA 
    ATGGCAAAAG AAAATGGATT TATAGGATCA ATCGATCAAG GAACCACCAG 
    CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30249602 [Map]; Strand: w
      • AT1G80460.2 - [+] show detail - Actin-like ATPase superfamily protein
        Distance: -297; Region: promoter
      • AT1G80460.1 - [+] show detail - Actin-like ATPase superfamily protein
        Distance: -349; Region: promoter
    Flanking Genome Sequence: GT15915 - 5-prime edge 
    AATTCAATTT TACGGATGGC CCTCATGAAA ACGTATCTTA AATACAAAGA 
    TATTATGGAT AGAAATGGGG TTATCTACTT CAGACCAAAA AAACAAAAAC 
    TGGGCTATCT ACTAGTAATA TTGATTACTA CTGCTCGTAA ATTTGGTGAC 
    CAGATTTTAC CAAGTAATGT ATATATTATG AGGCCTGCCC TAAGATTATC 
    ATATGTAAAT TGTAATAGCA ACATATGTTG GATGGATATG TATGAATTAA 
    TATTTTGATC AACTAACTTG TCTCGGAACA TCATCGTATA TTCAATTCAT 
    CTCACTCGA

AT1G80460.1

Model type
Protein coding
Short Description
Actin-like ATPase superfamily protein
Curator Summary
Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.
Computational Description
nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 17039 Blast hits to 17024 proteins in 2439 species: Archae - 160; Bacteria - 12245; Metazoa - 663; Fungi - 209; Plants - 115; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80460.2

Model type
Protein coding
Short Description
Actin-like ATPase superfamily protein
Curator Summary
Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.
Computational Description
nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR