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GT15922

CSHL Arabidopsis genetrap mutant lines

Original: GT15922

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15922

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 256952 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15922 - 3-prime edge
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATTCCGGCTT CGGATTATGA CCTTAAAGTC ATTCCCGGAA ACGCGATTTA
    TCAGTTTCCG GCGATTGATT CTTCGTCTCC CTCGACATAA TCAGAACAAG
    CGTTTGAAAT CATGCTCGAG TCCTGATTCT ATGGTTACAT CGACTTCGAC
    GGGTACGCAG ATTGGTGGAG TCATAGGAAC GACGGTGACG ACAACCACCA
    CGACAACGAC GGCGGCGGCT GAGTCAACTC GTTCTGTTAT CCTGGTTGAC
    TCGCAAGAGA ACGGTGTTCG TTTAGTCCAC GCGCTTATGG CTTGTGCAGA
    AGCAATCCAG CAGAACAATT TGACTCTAGC GGAAGCTCTT GTGAAGCAAA
    TCGGATGCTT AGCTGTGTCT CAAGCCGGAG CTATGAGAAA AGTGGCTACT
    TACTTCGCCG AAGCTTTAGC GCGGCGGATC TACCGTCTCT CTCCGCCGCA
    GAATCAGATC GATCATTGTC TCTCCGATAC TCTTCAGATG CACTTTTACG
    AGACTTGTCC TTATCTTAAA TTCGCTCACT TCACGGCGAA CCAAGCGATT
    CTCGAAGCTT TTGAAGGTAA GAAGAGAGTA CACGTCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 257006 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15922 - 5-prime edge
    CTTTCTCCCT GAGCCGGAAA ACACAAATCT CCGGCGAAGG AAGAACCGGA 
    TCTAAACCGT TAGAACTCGC CGGAAGAGGA GGAGGATTAA GCTCAGAGAG
    CATATTATCA AGCCAAGAAT AAAGCTCCGA CGGATTATAA TGAACAGTAT
    CCGTCGCGAG ATGAGATAAA CCATCTTCTT GAACATTACT CATCATCGTC
    TCTAATTGTT CGAGTTTCAA AGCAACCTCC GCCATCTCCG ATGACCTAAC
    TTTGTAACCT AAAACAGCGA GAAGCTCGTC GTCCATGTTA CCTCCACCGT
    CTTCTTCTTT TTTCACCATC ATCATCTTAT CTTTAGAGAT TGATGATGAA
    GAAGAAGAAG TCCCGTGGTT GGACAATCGA CCTTGGAATT GGTGATGATC
    TCTCTTCATT TTTCAGCTAT GAGTTTCGAT TAGATTAGGT CTGATCTTGG
    ATCTAGGGTT TTGCCTTTTT TTTAGTTTGT GTGTGTTTGG GGATGATGAA
    GGAAGAAGAA GAAGGAACAT GTGACTTCTC TATGTGAAGA ATCTTAAGAG
    CAAATGGGTT TGGGATTGGA TTGCTTTTGT TTTTCACTGC TACTACCACT
    TCAATCATCA TTCATACCAG AACTAATGAT AATAGTTTCT CAAAATAATA
    ATAAAAAAAT TTCTCAAAAA CTATTTATTT TATTTACCAG AAAATATAAA
    TTTATTAAAA CAAAAAGATA TTTATTCTGG ATGAAAATTA AAAAAAGAAA
    AGAAAAA

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR