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Mutant Lines
GT15928

GT15928

CSHL Arabidopsis genetrap mutant lines

Original: GT15928

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15928

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 1985461 [Map]; Strand: c
  - AT5G06510.1 - [+] show detail - nuclear factor Y, subunit A10
    Distance: 0; Region: exon2 (CDS)
  - AT5G06510.3 - [+] show detail - nuclear factor Y, subunit A10
    Distance: 0; Region: exon2 (5UTR)
  - AT5G06510.2 - [+] show detail - nuclear factor Y, subunit A10
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT15928 - 3-prime edge
```
GTTTTCCATG GGACTTTTGG ACCATAAGCT ATGCAAACTG AGGAGTTTTT 
GTCGCCCCCC CAAACCCCTG GGGGGAAGGT TTTTGGATCT CACCCGTTAA 
CAACAAAAAG CCTTTCCGGG AAAGTTTCTG ATTCATTCCC CGGAGTTAAG 
GCAGTTACTA CGGAGGCAAA ACAGGGGGGG GGGGAAAAAA AAATTTCTAC 
AACTTTTTTC ATTTTCTCAC CGGGAAAACT CTCCCAACTT TCAAAGGAAA 
GGGGAGCTTT CGGATTGTCC TAACTGAATT CTTAAAGGGG GTATCAATTA 
CCCTTGAAAA AAA
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 1985278 [Map]; Strand: c
- AT5G06510.1 - [+] show detail - nuclear factor Y, subunit A10
  Distance: 0; Region: intron1 (5UTR)
- AT5G06510.3 - [+] show detail - nuclear factor Y, subunit A10
  Distance: 0; Region: intron1 (5UTR)
- AT5G06510.2 - [+] show detail - nuclear factor Y, subunit A10
  Distance: 0; Region: exon1 (5UTR)

ACTTTCTCCC TGCTGTGTAA AAACTCTTAA CAAGGATAAG AATTTTTAGA 
CTTTAGTTTT AAAAGCATAG TACACGCAAC CCATCTCAAG TTCACAGTCA 
AGAAACAGAC TTTGTTTTCT AAAGAACGAA AATTTGGGAG AAACTATAAA 
AGTAGACCCA AAAATCAAAT CGTCAAACGA AACATTAATG TGAAAAATGC 
TAGACAAGAT CCACAATAGA TACTCGAGGA CACAATAAAG AGAAGAAGAA 
TCCAAAATGG AGTAAAGAAA ACATAAGTAG AAGAAACTTA CACAAGAGAG 
AGTGAGAAGC TTGAGATTCC TATTAGTTGG GAGCTATGTC GGTTCCAAAT 
TAGAAACAAA GATCCGCAGA GAGAAGGAGA GAGAAAGAGA TGAGTGAACA 
AGTGTAATGG AAACAACAAT AGCTTCATCA ACCAATCACC TTCAACTTTC 
ATGCGAGTAT TTTTTGTTTT ATAATATTTA TTAGAAAATG TTTTCTTTAG 
TAGTAGTAGG TGACATAAAA ATAAAAGAGA CAGAATTATT GCTCTAGTTA 
ACTGTAGCGT TGGCTTGACG TGCTCTCTCC ACAAGCTGCA ATGATCCCCA 
CTTCATTCA

AT5G06510.1

Model type: Protein coding
Short Description: nuclear factor Y, subunit A10
Computational Description: "nuclear factor Y, subunit A10" (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06510.2

Model type: Protein coding
Short Description: nuclear factor Y, subunit A10
Computational Description: "nuclear factor Y, subunit A10" (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06510.3

Model type: Protein coding
Short Description: nuclear factor Y, subunit A10
Computational Description: "nuclear factor Y, subunit A10" (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR