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GT15945

CSHL Arabidopsis genetrap mutant lines

Original: GT15945

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15945

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9551186 [Map]; Strand: w
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -179; Region: promoter
    Flanking Genome Sequence: GT15945 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCATTTT 
    AGTCACTTAA AAAAATATTT GTTTAGTAAG TCTTCTATCA AGTGGGAGAC 
    CAAGTCTTCG AGGAAAGGAA GACCAAGTTT CTCCTCTCTT TCTCTCTTAC 
    TCTCTTACTC ATAATATGTA TTGCTAATTT ACTTCTCTTA CGAATCTTCG 
    TCTCTTCTCT GAGTTCTCTC TATCGTCTCC CATGGCTTCT TCTTCTTCAT 
    CTCACTCGAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9551262 [Map]; Strand: w
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -255; Region: promoter
    Flanking Genome Sequence: GT15945 - 5-prime edge 
    CTTTCTCCCA CCTAACAGAC AATTGAGACG AACTAAACTA ATATGATACA 
    GAGGTTTACT ATACACCGGT ATTTTAAAAG ATTGATTTTG TGGTTGTCAA 
    CTGTCACTGA ATTATGACTA AGTCATTGTA AAAGACAGAA ATAAGATTAT 
    AATTTATCAT AATTTCGAGG CAAATAGACA AAAACTTCAA GTTTGTTTCC 
    TCTACAAAAG ATATTTTGAA GACTCAAACT ATCTAATTTG CTAAAATACT 
    CTTTTTAGTT TTCCAAAGTT GAGTGGTGTG GACAGTGGAG TGAAGATTGT 
    TAAATATATT TTTCTTATTT ACTTTTACAA TTGTAATATT AGTTTAGAGT 
    TTGGCTTACT GCGTCAGCAA CCACTGTAGA CTGCTGTTTA AGGAGCATTT 
    GGTTTCTAAG GGTTTCATGT ACTGGATGGA AGAAGTCGTG CTTGAGAGCA 
    TCCTCTGCGC TGATTCGTCG CCTCGGGTTA ACGGTCAAAC ATTTATCAAC 
    GAGGTCAAGA AGCGATAGTG GAATTACGTC TAGAAACTCT CTGCGTTTTG 
    TGTTGAGTTC GCACCATTTT CTCAACTCCA TCCCCTTCAA GTACCTTGAC 
    TCGTATAATT CCTGAAACAC AACACAAAAC TCTACCT

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR