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GT15949

CSHL Arabidopsis genetrap mutant lines

Original: GT15949

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15949

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3169319 [Map]; Strand: c
      • AT5G10120.1 - [+] show detail - Ethylene insensitive 3 family protein
        Distance: -413; Region: promoter
    Flanking Genome Sequence: GT15949 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACATCG AGTATGATGC 
    AACCGAAGAA CAAGTTTTTT TTGTTGTTGT TGTAAATGTT AAATACCGAA 
    GAAAAAGTTA TAGTAACGTC CGGCGTCGTG ATGCCCGGAG ATAACTCTTA 
    TCCACCTAAA AGACATAAAT ATTTCCGCCA CAAATTTCCA AATACTCTTA 
    CAACTTATGT TTAGCTCAAA CCAAACCAAA CCGGGAGATT TTGACACGTC 
    CTTCATCTCA CTCAGACAAA ATTTAAAAAT TTGAGCTTCT GACACAAAAG 
    GAGCCAAATG TAATACCTGG ATCCAATCCA ATGCAATGAA AACATCTTAG 
    CTGTAAAATG GGCCAATCTC TCTCTTTTCT TTCTACATTA TTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1415208 [Map]; Strand: c
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -741; Region: promoter
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -745; Region: promoter
    Flanking Genome Sequence: GT15949 - 5-prime edge 
    CCTACTTTCT CCCTGCACCC ATGTATTATT TGTGTGTGTG TGTGTGTGTG 
    TATATCCGGG GACTAAATTG TTTCTTTGTC CCCATTGGAC GACATCGAAG 
    AAAAAATATC ACGGGCGTTT CTTGTATCAA GACAAATGAG ACAGTGACGT 
    TTACTTAATC CGAAATTGTT TAACCTAACA CAAGTCCCAC TGGTTGAAAC 
    TTGGAAACGA TTTTTATACT AAACCAAATC ATCAGATTCA ATGTTATCAC 
    TCTATTTGAG TGTTGTTGTG TTCTGTCTAG TGAACAGTTA CCGAGCAAGT 
    GGCATGCGTG CGTGCACCGA GAGGCTCGGC TATTTGAGCC AACGGCTCTT 
    ATTTTTACTG TGTCAGTAAA AAAAATTAAA AGTTAATTAC TTTTATCATC 
    ATCATCACGA TTGGCACTAT ATACTCCATC ATCAACCATC ATGATCTTTG 
    TTTGTCAGTG ACTCATGATG AGATGACCCC AAATTACAAT T

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10120.1

Model type
Protein coding
Short Description
Ethylene insensitive 3 family protein
Computational Description
Ethylene insensitive 3 family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to karrikin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT5G65100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR