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GT15953

CSHL Arabidopsis genetrap mutant lines

Original: GT15953

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15953

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15970415 [Map]; Strand: c
      • AT2G38110.1 - [+] show detail - glycerol-3-phosphate acyltransferase 6
        Distance: -14921; Region: intergenic
      • AT2G38120.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: -2578; Region: intergenic
    Flanking Genome Sequence: GT15953 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GGAACCGATC GGTTTCTTTC CTACCGCCAA 
    ATAATGTTCG AAGTGTTTTT TTTTATCAGA AACTAAGTCG ATTTCTGAAA 
    AACGTTGTGA TGTATAGCAT ACGCCTAACT TTTATGCTGA ATGTAGATAG 
    CTAGAAACCT AATTGTTTAA GGATGGAGAA AAAAAACTAT AGTGTCCTCC 
    ATAAAAAACA GGTCATCTCC GAAGAGTTAT TTTCAAAATC GACATTAATG 
    ATCAGTTACA TATTTTTTAA TCATTATTTG AAACAATTAT TTTATAATTT 
    TAGCTAAGTA TGTGATTAAA ACAAATGAAA AAAAAAACCT TTAAATGGGG 
    GGGTTAAACT TTTTTGGGGA AGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15970353 [Map]; Strand: c
      • AT2G38110.1 - [+] show detail - glycerol-3-phosphate acyltransferase 6
        Distance: -14859; Region: intergenic
      • AT2G38120.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: -2640; Region: intergenic
    Flanking Genome Sequence: GT15953 - 5-prime edge 
    TTTCTCCCTG TTTGACGGTA GTTTGATCAT CACTTGGAAA CCAAATTGCA 
    TTTCTACTAG ACCTAGAAAA ATAATCAATA CTAATACTTA ATAACTAATA 
    CTCGGTTTTT AAAGGAGATG GCAATTGTTA TAATCGGTTA TTAATTTTTT 
    GGTCAAAGAT AAACGGTTAT TAATAACGGT TATATAATGT TTGAAACACC 
    TGTGTGTGTT TTTAATTAAG CCAACTATGA ACTTAAAGTT AAATTATAAT 
    AAAAATTTGA ATTTGTAATT TATGTTGATG GAGAAATTTT ATCCCAATTC 
    TTGTCATTTA TTCTTTTAAT TACATTATAT CTATGTTTCT CACGCATGCA 
    TAAAAGTCAA AAATTATATT GCT

AT2G38110.1

Model type
Protein coding
Short Description
glycerol-3-phosphate acyltransferase 6
Curator Summary
Encodes a protein with glycerol-3-phosphate acyltransferase activity.
Computational Description
glycerol-3-phosphate acyltransferase 6 (GPAT6); CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1); Has 444 Blast hits to 431 proteins in 52 species: Archae - 0; Bacteria - 47; Metazoa - 20; Fungi - 0; Plants - 368; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38120.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Curator Summary
Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
Computational Description
AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR