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GT15960

CSHL Arabidopsis genetrap mutant lines

Original: GT15960

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15960

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54772 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1323; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2427; Region: intergenic
    Flanking Genome Sequence: GT15960 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGAGGA 
    GCAGATATGG TGGGCAAGCT TGGCATCTAC AAAAGTTGAG ATGGAGATTG 
    AAAGAGAGTA AAAATTGTAT CAAAAGCTTC TCTCATTAAA TTATTTATTT 
    AACTAATAAA TAAACACAAG TAAGAAAAGA ATTTTAAAAT TAAAAATAAT 
    ATAAATACAT TTTTAACTTT TGTTATGCAC ACAAAAACAC ACCCATCAAT 
    TTCATNTTCA CTCGACCACC ACCTTATTAT ATATCTTTTT AGGGGGTCGG 
    AATTATATTA CGTACAACCT TTTGTTGGTA TACTCCTCTT CTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54716 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1267; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2483; Region: intergenic
    Flanking Genome Sequence: GT15960 - 5-prime edge 
    CCTACTTTCT CCCTGTGCTC CTCAACCTCT CACTTTACAA GTACTTCATT 
    TATTTTCTTA GTTAGTCTAT TTATTTCAAT AAACAAACTC TACTCAAGTT 
    CATCAAGATT CGTAACAGTG GAATCCTTTA TTAATGTTAG ATCATCAAAC 
    TCTACACATG TTTATTTCCA TCTCTATGCA TGCCTTTATA TTGCTTAAGT 
    TGTATACACG TACATATACA CTTCACTACT CTTATTATCT AGTTCCATAT 
    TACGCTATAT ATTTATGAAT TTATATACAT AGACCATACT CATGTCCTTG 
    AAAATCAGTT ACATGTTTCT TTTGTTC

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR