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GT15975

CSHL Arabidopsis genetrap mutant lines

Original: GT15975

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15975

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1932668 [Map]; Strand: c
      • AT5G06320.1 - [+] show detail - NDR1/HIN1-like 3
        Distance: -900; Region: promoter
    Flanking Genome Sequence: GT15975 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTAAAGC AAGGAAAACT 
    AAGGGAGGTT GGTGTTTAGA GTTGGATGAT GTGACCTGTA ATTGAAAGGA 
    AGATTAGGTG AAGCCATGCT TTCAAATGCT TACATCTTTC TTCAATGAGA 
    AAGGTCAAGC ATATTTAATA AAGACTAATA ATACTAGATC GCAACTCAAT 
    CATATTAAAC TTTAAAACAA CTATGGAGGA TTTATAAAAA CAAATGTAAC 
    AACTAAAAAA AGTATTCTTA TAATATGAGA TGTAATGTGT TTTATTTATT 
    TATTAAAGTA GTCAATGTAG TTTAAGAAAT TTTTATGTGT TATACGGTAT 
    AACAATAATT TTCATTGTAT ATGATAAGTA ATACACAATA ATTTTAAAGA 
    AAAACCTGGT GATGAACAAA CGTGTTTGAA AAACTTGTTA GAGTTTAATG 
    CGGTGTCAAT GTGTGTGGTG ATAAAACATT AAACTAAATT GGACAACAAA 
    TATTTCACGA AGACTCCTTC AATCTTAGCC GTTTGGACGA AATAGATCAA 
    TGGAATTGGA CAAATAAATG ATGAAGACTT AGGTTGTTCT TAGGGTTTTG 
    AAAATGGAGG AACCGACGAC CGATCCCTAT CTACTCAATT CCGATATTCA 
    TCCGAATAAA TTATTGAAGA AATTGCGTTG AATAGATGTC CACTAAAGTT 
    TAAATGGACA TA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1932597 [Map]; Strand: c
      • AT5G06320.1 - [+] show detail - NDR1/HIN1-like 3
        Distance: -829; Region: promoter
    Flanking Genome Sequence: GT15975 - 5-prime edge 
    CTACTTTCTC CCTACTTTTA GCATTATAAC ATGTAACAAC TCTTTGCAAT 
    GTTTAATTTT CTTTGAATTT GAGAAATCTT TCACATTAAA CATTTTCATT 
    AATTGATAAT TAATTATATA ACCTTTATCA GTAGAACTGT TCTCATAGTT 
    ATAAAATAAA CATTTGGAAA ACCCCACCTC AGTTTCAACT TGCAACCTAT 
    ATAAATATAA TATCGAAATT CTTGACCGGG ACTGGTTTGT CATCTTCAAA 
    CTTTGTATAG GCTTGTTGAT ATTTTGGCCA CATTTTCTAT TTTTGTTCTC 
    GAAAGTCTTT CGTCAAGTTT AAGAAACAAT GGCTATATTA GAGCAGTCGC 
    TTTTGGGGAA GTTTCTCGGA AGCTTAGTTA CATTGTAAAA AGGACTCTAT

AT5G06320.1

Model type
Protein coding
Short Description
NDR1/HIN1-like 3
Curator Summary
encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.
Computational Description
NDR1/HIN1-like 3 (NHL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, defense response to bacterium, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR