1. Home
  2. Mutant Lines
  3. GT15978

GT15978

CSHL Arabidopsis genetrap mutant lines

Original: GT15978

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15978

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3169048 [Map]; Strand: c
      • AT5G10110.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -751; Region: promoter
      • AT5G10120.1 - [+] show detail - Ethylene insensitive 3 family protein
        Distance: -684; Region: promoter
    Flanking Genome Sequence: GT15978 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGAA 
    ATACACAAAT ACTAAAATAC AATTCATGCG TCTTGTTTTC TAAGATGGAA 
    AGTTCCCATG AATTTTCTTT CCGGCTTTGA CTATCTTAAG GCGGCCATTT 
    TAAAAATATA CCAACCATGC TTAAAAGAAA AAATAGGTAC AATTTACAAA 
    AACATTCCTA TATTATGCGC AAAGTGACAA GAAAAAGAAA CAGCCCTATC 
    AAAAGTTTTA GTTAGATATA TTAATTAAGT CGGTGCAATC AACTCTCGTT 
    ATCCATCGAG TATGATGCAA CCGAAGAACA AGTTTTTTTT GTTGTTGTTG 
    TAAATGTTAA ATACCGAAGA AAAAGTTATA GTAACGTCCG GCGTCGTGAT 
    GCCCGGAGAT AACTCTTATC CACCTAAAAA ACATAAATAT TTCCGCCACA 
    AATTTCCAAA TACTCTTACA ACTTATGTTT AGCTCAGACC AAACCAAACC 
    AGGAGATTTT GACACGTCCT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1976021 [Map]; Strand: w
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15978 - 5-prime edge 
    GATCCTCTCA CTCAGCCAAC TCATCGTCTC CCAATGTGCT CTATGTAACG 
    TCTAATGGAA ATCAAAACTC CATGTCTCGC GACAACAATC ACAACACTTA 
    TCGTGACAAC AACAACACCG GCTACCGCGA CAACAACCAC AACAACTACA 
    ATGGGCACAA CAACAATGGT AGAGGTCGTG GACGTGGACG TTGCGGTACC 
    GGCAGTAACG GCAGTAACGG CAGAGGTCGT GGACGCCAAA ACTGGCAATG 
    GAATCCTCGC AATTGGCAGA CACAACAACC ATGGCTCTCA ACACCAACCC 
    CATATCCACA CTGGCCACAA CAAAACTGGA TGCAAAGACC ACCGATGGCA 
    TACTTGACAG CCACGAACCC AGCAGCAGGG CTCCTTGGTT CTTCTCCACA 
    AGCAGCTATG GTTGGTTCGA CTAATCAATT GACGCAAATT CCTGCAAACC 
    TTGCTGCAGC TTTTGGGACT ACAACTATGC CAGATCCTAC AGATGCAAGT 
    TGGTACATGG ACACGGGCGC GACAACTCAC CTCACCGCGC AGCCAGGTAC 
    CCTCCATTCC CTTTTTAATT CGAGCTCATC CCCATCGGTT GTGTTCGGTA 
    ATGGATCTTC TGTTCCAACT AAAGCCATCG GTTATTCATT TTTGCCTTCT 
    AAAATACGAC CTCTCCATCT TCATAATGTG CTTGTTTGTC CTTATATAAT 
    CAAAAATCTC GTTTCTGCAC GTCAATTTAC TAAAGATAAT TATGTATCTG 
    TGGAAATTGA TCCATTTGGT TTTTCTATTA AGGATTTCAT

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT5G10110.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10120.1

Model type
Protein coding
Short Description
Ethylene insensitive 3 family protein
Computational Description
Ethylene insensitive 3 family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to karrikin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT5G65100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR