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GT15984

CSHL Arabidopsis genetrap mutant lines

Original: GT15984

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15984

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1932774 [Map]; Strand: c
      • AT5G06320.1 - [+] show detail - NDR1/HIN1-like 3
        Distance: -1006; Region: intergenic
      • AT5G06330.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 1965; Region: intergenic
    Flanking Genome Sequence: GT15984 - 3-prime edge 
    GGTGAAGCCA TGCTTTCAAA AGCTTACATC TTTCTTCAAT GAGAAAGGTC 
    AAGCATATTT AATAAAGACT AACAATCCTA GATCGCAACT CAATCATATT 
    AAACTTTATA ACATCTATGG TGGATTTATA AAAACAAATG TAACAACTAA 
    AAAAAGTATT CTTATAATAT GAGATGTAAT GTGTTTTATT TATTTATTAA 
    AGTAGTCAAT GTAGATTAGG AAATTTTTAT GTGTTATACG GTATAACAAT 
    AATTTTCATT GTGTATGATA AGTAATACAC AATATTTTTA AAGAAAAACC 
    TGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8000161 [Map]; Strand: w
      • AT2G18450.1 - [+] show detail - succinate dehydrogenase 1-2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15984 - 5-prime edge 
    CTTTCTCCCT GCATATAAAT ATAGAAACTT GCCGAAATAA GTAACTTGTA 
    GAGTAACAAA GAAGCAAGTT TTATCTGTGT ATACATAAGT AGATCATCAG 
    CGTACCTAAC CAATCACTTC CTTTGACAGT ATCATACATA TGCCATCTCC 
    AGTCATCTAC ACTCATATTA CCCAACGCAG CATTTATACC TCCCTTCACA 
    ACAAATTTCA TAACTCAATC AAAAACAAAA GCAAGCTTAA TTATAAGGCT 
    AAAAACAAGA GTAAGCAAAT GTTGGCACCT GAGCTGCAAC AGTATGGGAA 
    CGAGTTGGAA AAAGCTTAGT GATACAAGCC GTGTTAAAAC CATGCTCTGA 
    TAATCCTATT GCTGCTCTTA GCCCAGCACC ACCAGCTCCT ACAACAACCG 
    CATCATATGT ATGATCTACG ATCGTATACG ATGATTTATC CCCTGCCTTT 
    TTCCAACAAA GAACACAACA AATCAAAACC AAACCAACTA CGCAAAATCA 
    TACCAAAAAT TGTGTTCTAA TCGAAACAAA GCTAGAAATT AGTCAACCAA 
    TGAAATGATG AGAAACCCCA AAGACTAAAC GAGATCGATG ATTCAAACAA 
    TGTCTCGTAC CGAAGGAGGA GCTGAGAAGA ATCTGGAGAG TTGAGAAGTG 
    ATG

AT2G18450.1

Model type
Protein coding
Short Description
succinate dehydrogenase 1-2
Curator Summary
Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .
Computational Description
succinate dehydrogenase 1-2 (SDH1-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-1 (TAIR:AT5G66760.1); Has 17303 Blast hits to 17274 proteins in 2651 species: Archae - 275; Bacteria - 9814; Metazoa - 271; Fungi - 379; Plants - 135; Viruses - 0; Other Eukaryotes - 6429 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06320.1

Model type
Protein coding
Short Description
NDR1/HIN1-like 3
Curator Summary
encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.
Computational Description
NDR1/HIN1-like 3 (NHL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, defense response to bacterium, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06330.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 1 (TAIR:AT3G11660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR