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GT16010

CSHL Arabidopsis genetrap mutant lines

Original: GT16010

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16010

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172901 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16010 - 3-prime edge
    GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAACC GTAACATCTC 
    CTTATACACC TCCGTGGCTT CTTCCACCCT CCCATCAGCG AAAAGCATCT
    TCATGTAAGC AGTGTACGAC ACAACGGTAG GTTCGCACCA ATTATCTCTC
    ATCTCCTCCC ACAACCTCAT TGCTCCATCC ACATCACCGG AGCTTGAAAC
    CCAGTGAATC AGCGATGTAT AAGTCACCGT ATCGATCAAC ACACCCTTCT
    CCTTCATAAG GTGAAAAACA GAGTACATGG ATTGAATCCG ACCGGCTTCT
    CCGAAGATAT CGAGCATGGT GGTATAAGTG AAGTGGTCGT GTTTGAAACC
    CTTGATTTGA GCAGCCCAGT TGAAAAAGAG CCAAGCTTTC TGCATCGGAG
    GATGTGCTTT CAAGACACGG TTGATAATGT GAGAATCCCA TCTGACGCCG
    AGATGTGGAA GCTGTTCTTG AGCAGAGTCC CAAGTGGAGT ACTTGAGGAT
    GTTATAGATG TTGGATACAA TGTCTCTTGT GTAAACACTG GGATCTGGTA
    GGGTCTGTGT TTTCACAAGT TTGGGTTTTT GGGAGAATCG CTTGGAGTTG
    GTGGGTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172969 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16010 - 5-prime edge
    CTTTCTCCCT GGTTACGGTC GCGGGTTTCT CCGAATTGTC ACACTTATAC 
    TGTATTGATG GAGTATCTTG TCGCCACAGG TCAACTTCAT TCTCTTGCAC
    ACTAAGTGTT TGTTAAAATG CTTAGCTGAA AATCCAAAAC TTTTGCTTTA
    TGTAGATGAT TCTGGTATCT GAATGTTTTG TAGCCTTGTT GATGATGATG
    TGTTAGTTTC TTCGTTTGAT TTTGCAGGAA AATGTGAGGA AGCCTTGGAC
    ATATTCTTTA AAATGCAAGA AATTGGTGTG CAGCCAGATA AAGCAGCTTG
    CAATATTCTG ATAGCGAAAG CCTTGAAATT TGGGGAAACA TCTTTCATGA
    CTCGAGTTCT TGTGTACATG AAAGAAAATG GAGTTGTCCT ACGCTATCCT
    ATCTTTGTTG AAGCTTTAGA GACACTGAAA GCTGCAGGCG AAAGTGATGA
    TCTGTTAAGG GAAGTCAACT CGCATATTTC CGTTGAATCG TTGTGCTCCA
    GTGACATTGA TGAGACTCCA ACAGCGGAAG TTGATGACAC TAAGAATTCA
    GATGATAGTA GAGTTATCAG CTCCGTTCTC TTGATGAAGC AGAATCTGGT
    TGCAGTTGAC ATTTTACTTA ACCAGATGAG AGATAGGAAC ATAAAGCTGG
    ATTCTTTTGT TGTTT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR