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GT16020

CSHL Arabidopsis genetrap mutant lines

Original: GT16020

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16020

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15368167 [Map]; Strand: w
      • AT4G31750.1 - [+] show detail - HOPW1-1-interacting 2
        Distance: -451; Region: promoter
      • AT4G31760.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT16020 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTGACG AGTTTTGGTA 
    CTTGAAAATC GTCTTCTAGT TGTCGAGACA GATCCTCTTT CTAAAGTTGC 
    GTCTAATATG GGAAACACAT TTTCGATTTG GAAACAAACA AGAAAACGAG 
    TAGCAAGTAA AGTGAAATTA TTTACTACTA CTAGTTAGTA CAGAGGAGGA 
    CGTGAGATAA ATCAAGCGTA GAACAATCAG CTGCATGTGA CAGCCACGTG 
    TCGAAATCTA GTGAGAAGGA CGGTTGATTC ATTCTAACTT GGGTTCGCCG 
    TAAAGTTGAC AAACCCAAAA AAAATAAAAA

AT4G31750.1

Model type
Protein coding
Short Description
HOPW1-1-interacting 2
Curator Summary
Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).
Computational Description
HOPW1-1-interacting 2 (WIN2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, defense response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G24940.1); Has 8917 Blast hits to 8860 proteins in 1196 species: Archae - 18; Bacteria - 2164; Metazoa - 1691; Fungi - 821; Plants - 2764; Viruses - 9; Other Eukaryotes - 1450 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31760.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G24800.1); Has 4890 Blast hits to 4865 proteins in 330 species: Archae - 0; Bacteria - 4; Metazoa - 8; Fungi - 452; Plants - 4339; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR