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GT16042

CSHL Arabidopsis genetrap mutant lines

Original: GT16042

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16042

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5039950 [Map]; Strand: w
      • AT4G08108.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16042 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCTGGAA GTCTAGTTTA 
    CAGCATGTTG TAGCATTGTC TTCTACACAG ATTGAGTTTA TTGCACTCAC
    TGAAAATGTG AAGGAAGCAA TTTGGATTAG AGGATTGCTA GATGATATGG
    GATTGAAGCC AAAGCCAACA ATAGTGTGGT GTGACTCTCA ATCAGTTATT
    TGTCTGTCAA AGAATAATGC TTTTCATGAT CGAACAAAGC ATGTGGAAGT
    CAAGTTCTCT ATCAGCAAAG ACTTTATTAA CAACTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11364543 [Map]; Strand: w
      • AT4G21360.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16042 - 5-prime edge
    TCCTACTTTC TCCCTGCTTC CGCTCACAGT ATTACCACCA ACAGTGAAAA 
    CGTATCCGCT TATGGACCTT CATCTCACTC GACACAGCAA CATGATCAGA
    GTCACAAAAT CCCTGGACTT CCAGATTGGA TCCTTTGGTA AAAACCAAAT
    TTAACTCTCT TGACCCTTTG ACTCCATAGT GCATCTCTCC AGGTCTACTC
    GTAAAACTGC TCACTAAACC CGTGGAACAA GCAACATTCG GCCTAGTACC
    AATCATGGCA TACATCACAC TACCCCACAT CACTTGAATA TGGAATCACT
    CCTGGATCCA CACTTCCAAT CTCATCAATG AGGGATGTCA ATTTAAAATG
    AGCACCCATT GGAGTACTCA CAACCTTAGC ATCAGCCATT CTAAATCTCT
    GTATCACTTT GTCCAAATAT CTAGTTTGTG ACAAGTGTAG AGTACCCTAC
    TTTCT

AT4G08108.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G21360.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR