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GT16046

CSHL Arabidopsis genetrap mutant lines

Original: GT16046

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16046

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14950027 [Map]; Strand: c
      • AT4G30620.1 - [+] show detail - Uncharacterised BCR, YbaB family COG0718
        Distance: 0; Region: exon1 (CDS)
      • AT4G30630.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -611; Region: promoter
    Flanking Genome Sequence: GT16046 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCC 
    GTCGAAGCCA TTGTTCTCCT GAAACAGAGA AGTGTGCTTC GACAAGATAA 
    ACAGAAAGAA CGAGATATGT TTCTTAAAGA CTAATAAGAT TGTGCCACGT 
    GGAAAAGCTT GAGGATCCCT TAATTGGGTT TAATGGGCTT TTAAAATTGA 
    TGCTTATATG AGAAAAAGCC CAAAGAAGAG ATTATTTTCA CAGGATTTGG 
    GTCCAATAAT AATATGAGAA ATTGAGAATT ATGCAAAAAC ATGTATTTGA 
    CTAAAAGAAT AAATAAAAGT ACATCATATA TACACACATT ATACACACCA 
    GTCACCAATC ATCTCTCTTG TCAAATCTCC ATAGTTGCTT CT

AT4G30620.1

Model type
Protein coding
Short Description
Uncharacterised BCR, YbaB family COG0718
Computational Description
Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT2G24020.2); Has 1854 Blast hits to 1854 proteins in 759 species: Archae - 0; Bacteria - 1576; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30630.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR