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GT16048

CSHL Arabidopsis genetrap mutant lines

Original: GT16048

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16048

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2646245 [Map]; Strand: w
      • AT3G08710.2 - [+] show detail - thioredoxin H-type 9
        Distance: 0; Region: exon5 (CDS)
      • AT3G08710.1 - [+] show detail - thioredoxin H-type 9
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT16048 - 5-prime edge 
    TTTCCTCCAC TTTATCCCTG CTAAAGAATG GACAACAAAT AGGCAAGCTT 
    GTTGGAGCAA ACAAACCGGA GCTACAGAAG AAGGTTACTT CTATCATTGA 
    TTCTGTGCCT GAAAGTCCTC AACGGCCTTG ACTCTTGACT CTCGCAGCCT 
    TGTGTTCTGA GGTCTGTTCT TGTGTCTTCA TCTCACTCGA

AT3G08710.1

Model type
Protein coding
Short Description
thioredoxin H-type 9
Curator Summary
Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.
Computational Description
thioredoxin H-type 9 (TH9); INVOLVED IN: N-terminal protein myristoylation, cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08710.2

Model type
Protein coding
Short Description
thioredoxin H-type 9
Curator Summary
Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.
Computational Description
thioredoxin H-type 9 (TH9); INVOLVED IN: cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).
Link
InterPro Scan - TAIR