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GT16084

CSHL Arabidopsis genetrap mutant lines

Original: GT16084

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16084

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 114834 [Map]; Strand: c
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -868; Region: promoter
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: -137; Region: promoter
    Flanking Genome Sequence: GT16084 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TATTCTTGAG 
    TATATCAATG GTCTCTCATA GTTTCAACAA CACCAATAAA CTGTCATCTT 
    CAAGTTGGAG TTTATTACAC TCGTTCCTTC AAGAAACTGT ACCGTCGACT 
    TTCAGATCTA GCCATTTAGG ACTTCTCAAG ATTTTGAAAA TGGCGCATCA 
    ACATTTCTTC AAGCCTCTTC TTCCTGGCTT CCACGCCTCC TTGGTACTCT 
    CTTTCTCGCT CTTTCCCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4867162 [Map]; Strand: c
      • AT5G15030.1 - [+] show detail - Paired amphipathic helix (PAH2) superfamily protein
        Distance: 0; Region: exon6 (CDS)
      • AT5G15030.2 - [+] show detail - Paired amphipathic helix (PAH2) superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT16084 - 5-prime edge 
    GGACGTGTTT CATGATCAAA AGAACACATA CCATCTGTTT CTCGAGACTC 
    TGAGCGACTT CAAGGCACAA AGGTATAACA TCCTTTTTGT TTTGTCTCAT 
    CAAGTATCAT ATTTAGCCTC TGAACCCATT CTTCATCTTG CATTTTA

AT4G00250.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15030.1

Model type
Protein coding
Short Description
Paired amphipathic helix (PAH2) superfamily protein
Computational Description
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1); Has 744 Blast hits to 575 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 160; Plants - 330; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15030.2

Model type
Protein coding
Short Description
Paired amphipathic helix (PAH2) superfamily protein
Computational Description
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.2).
Link
InterPro Scan - TAIR