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GT16087

CSHL Arabidopsis genetrap mutant lines

Original: GT16087

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16087

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4887658 [Map]; Strand: c
      • AT1G14315.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -219; Region: promoter
      • AT1G14315.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G14320.1 - [+] show detail - Ribosomal protein L16p/L10e family protein
        Distance: -556; Region: promoter
      • AT1G14320.2 - [+] show detail - Ribosomal protein L16p/L10e family protein
        Distance: -556; Region: promoter
    Flanking Genome Sequence: GT16087 - 5-prime edge 
    CCTACTTTCT CCCTGGCTGA TTCTCCTCCA CTTAAAACTA ACGTGTTGTT 
    GATATCATCA GAACGATATC ATATTTACCA ACTTTTCCAC AATAGTTGTG 
    ACGGTCTTGT TTGCCTCTTT GATTACCAAA CCTTAAACAA CATTGTTTAT 
    AATCCCGCCA CTCGATGGCA TCGACGTTTC CCTGTTTCCA GGTTGCAACA 
    AATCTGTCTT GAGCAGCCAA GTTATTTTAG TCACGTTAAA TTTGGATTTG 
    GCAAAGACAA AATCAGTGGC ATATACAAAC CGGTTTGGTT ATGTATAACT 
    CTTCCGAACT TGGCCTAGAA AACGCTACTA CATGTGAAGT TTTTGATTTT 
    AGCACCAACA CTTGCAGGTA TATCAATCCT TCTTCTCCTT ATCGGATTAA 
    TACTTCCTCG TCTCGGGGGC ATGCTCTGTA TGTAGATGGA TCGCTTTATT 
    GGTTAACCGG GAAGAAAGAA ATTAAAGTTT TAGCGTTAGA TCTCCACACC 
    GAAACTTTTC AAGTTATCTC TAAAGCTCCT TTTGCGGAAG CAGATCATAG 
    AAACATTATC ACACGCAGCC TGAATAACCG TTTGTGCTTA TCGGTTAGTA 
    AACCTCTCCA ACAAATGATA ATATGGTCGT TCAATTCAGA GAACAAGACC 
    TGGGAACAAA TATATTCGAT AGTGAATCGT AGTGTTACGC AATCATTACC 
    AGTAGCCATT TT

AT1G14315.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14315.2

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 1107 Blast hits to 1070 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1105; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14320.1

Model type
Protein coding
Short Description
Ribosomal protein L16p/L10e family protein
Curator Summary
Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.
Computational Description
SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14320.2

Model type
Protein coding
Short Description
Ribosomal protein L16p/L10e family protein
Curator Summary
Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.
Computational Description
SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1844 Blast hits to 1606 proteins in 584 species: Archae - 300; Bacteria - 0; Metazoa - 671; Fungi - 224; Plants - 162; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).
Link
InterPro Scan - TAIR