1. Home
  2. Mutant Lines
  3. GT16095

GT16095

CSHL Arabidopsis genetrap mutant lines

Original: GT16095

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16095

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541177 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16095 - 3-prime edge 
    AGGTTTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGG TGGTTGGATG 
    ATTTGGAGAA GATTGTGAAT CCTAATGTGG CGATGGCAAT GCCGACGAGG 
    ACGAAGACGA GTCTCTGTTC TCTGAGCATG TAACGGATCG GACGAATCGC 
    TACGAACCAT GGCTTTATCG GCTTTGGATA ATAAGATTCC GCTTCTGGTT 
    GCTCTATCTC GTGTCGCCGG TTTGTCAGCT CAGACGCCAT CTTTCAGAGT 
    TTCTGGATCC ACGATCGTGA TAAATGGAAG GAGAAAGTAA TCGTGATTTT 
    ACCGAGTCGA ACTAGCCGGA GACTGAGTCG ACCTGTAGGA CGGGGAGTGA 
    AAACCGATTT GGGTTTTCGC TTGTATTTAA GTAGACGAAG GTGCGTTACT 
    GTTTTAGCCT CGTTCTTCTT CTTTTATTAC GATGATGCCC CTATATTTAC 
    TTTGTTTCTC TCTCTCTTTT AGGCGTTTTT CAGATTTGAA AAGTAAACGA 
    TTCTTCAAAA CCGGACGGAC ATTGATTACT ATCTTCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541082 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16095 - 5-prime edge 
    CTTACGACGT GGATCCGCTT TCCGGATACG GAATGCGAGC GGAGTCATCG 
    TATCTGTCAG CGAGCGATTC ATAAGAAGCC AAGCATCGAG TACATGAGCC 
    GGACCGACCC TTTTCGTAAA AAAATCCCTC TAGGCTTGAA ACGGAAAGTG 
    CTAAGGGTTG TTGTGACAGG TGGAGCAGGG TTCGTCGGGT CACACCTGGT 
    GGACCGGTTG ATGGCTCGAG GAGACAACGT GATCGTGGTC GACAATTTCT 
    TCACGGGAAG GAAAGAGAAC GTGATGCACC ATTTCAATAA CCCTAATTTC 
    GAGATGATCC GTCACGATGT AGTGGAGCCG ATCCTTCTAG ATGTTGATCA 
    GATCTACCAT TTGGCATGCC CTGCTTCTCC GGTTCACTAC AAATTTAATC 
    C

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR