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GT16111

CSHL Arabidopsis genetrap mutant lines

Original: GT16111

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16111

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18779158 [Map]; Strand: w
      • AT5G46290.3 - [+] show detail - 3-ketoacyl-acyl carrier protein synthase I
        Distance: -2416; Region: intergenic
      • AT5G46295.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 638; Region: intergenic
    Flanking Genome Sequence: GT16111 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCTA CTTTTACCTT 
    AATAGACATG AGATTAGCCA GTCGTGCACT AGATTCATTC AATAACAATT
    TTTTTTTTTT TTGGGGGGAA AAATTTTTTT CAAAATTCCA AAATGGTGGG
    GTTTAAAAAA AATGGGGGGG GGTTGGCCCC AAAAAAACCC CAGGGAAATT
    TCCAAACATA ATTTTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18779223 [Map]; Strand: w
      • AT5G46290.3 - [+] show detail - 3-ketoacyl-acyl carrier protein synthase I
        Distance: -2481; Region: intergenic
      • AT5G46295.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 573; Region: intergenic
    Flanking Genome Sequence: GT16111 - 5-prime edge
    CCTACTTTCT CCCTGAAAGT AGGGTCTCTC CTATACAAAA ATTGAGGCAA 
    ACTACGAAAT CAGGAGACTA GAAGTAGACA TTCTCCGATA ACTTTGAGAC
    CAAAAGCGAC GAATTGTTTT ATAGCTTCCA AAACTCACTG GCTTGCACTA
    TTTACGTAGG TACAAATACA TTTGACTTTT TACAAATACA ACTCTACATT
    GAATTTTTGA CTAATTCAAC AT

AT5G46290.3

Model type
Protein coding
Short Description
3-ketoacyl-acyl carrier protein synthase I
Curator Summary
3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,
Computational Description
3-ketoacyl-acyl carrier protein synthase I (KAS I); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Beta-ketoacyl synthase, active site (InterPro:IPR018201), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Polyketide synthase, beta-ketoacyl synthase region (InterPro:IPR020841); BEST Arabidopsis thaliana protein match is: fatty acid biosynthesis 1 (TAIR:AT1G74960.3).
Link
InterPro Scan - TAIR

AT5G46295.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR