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Mutant Lines
GT16144

GT16144

CSHL Arabidopsis genetrap mutant lines

Original: GT16144

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16144

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 15136626 [Map]; Strand: w
- AT4G31120.1 - [+] show detail - SHK1 binding protein 1
  Distance: 0; Region: exon1 (5UTR)
- AT4G31120.2 - [+] show detail - SHK1 binding protein 1
  Distance: 0; Region: exon1 (5UTR)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACGCTCG AGAAAAGAAG 
ATCACTTCCA TCTGCAAATT CCTTCACTCC CTGTGAGCTC AATAGAGAGA 
GAAGAAGAGA TGCCGCTCGG AGAGAGAGGA GGATGGGAGA GGACCGAGTC 
CAGATACTGC GGCGTTGAGA CTGATTTCTC CAACGATGTT ACTCATCTTC 
TCAACTTCAA CATTTCCACC GGCGGTTTTG ACTATGTTCT CGCTCCTCTG 
GTTTGTTTCC TTCATCTCAC TCGA

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT16144 - 5-prime edge
```
CGTGGCCGTA CCGACCGTTA TCG
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 3107750 [Map]; Strand: w
- AT3G10070.1 - [+] show detail - TBP-associated factor 12
  Distance: -935; Region: promoter
- AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTACAAGGCC TTTTGGGTAA ACCATCATTT CTCCCCCTTC CATCACTTTA 
GCGTAAACCT TATTGTTCGA GTCCACAAAA CCAGAGTAAA CCCGTCCTTT 
AACCAAGTGG GCTACTTCCG TCGCCCGCGG ATGGTAATGT GGTGGGTTAA 
TGGATCCGGG TTTGAGATCA GCCCGGACAA ACGAGATGCC TAATGTATTA 
AGGCCGGGGA AGTTTTCTGG GCCTACTGGG ACGGTGGCGA ACCCCGTCTC 
CGTGAAGTTT CCGGCAGTTT TTAGACCGGA AAAGACAAAA TCTTCGGTGG 
TTACTTCGGA GGAGTTTTTG CAAGGGAGAT TGGTGGAGAA GTGATGGTCA 
TGGTAAGGAG ATGTCACAGG TTTTGGTATG CAGAAGTCTT GGATGGGATC 
AGGGTCGGAA GCTAATGTGA AGCATACATT AAAACAAAGA AGACAAAGAG 
CTTTTAGAAG AAACAAAGTG TTTGCTTCCA TTTTACTTGA GGTCCATGTG 
AAGAAGAGTT GTGTTACATC CGGTTTAAAT AAGCATATGT ATATCTGGTG 
GGGGTAAATG AGAGACTGGT TAAGATGGTT ACTTTTTATC AACCAAAATT 
TCGCCTGTGA AAATAAGGTG TGGGTTTTTG TACCAAATGA AAAA

AT3G10070.1

Model type: Protein coding
Short Description: TBP-associated factor 12
Curator Summary: Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
Computational Description: TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G10080.1

Model type: Protein coding
Short Description: RmlC-like cupins superfamily protein
Computational Description: RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G31120.1

Model type: Protein coding
Short Description: SHK1 binding protein 1
Curator Summary: Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description: SHK1 binding protein 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 957 Blast hits to 940 proteins in 238 species: Archae - 11; Bacteria - 37; Metazoa - 444; Fungi - 148; Plants - 166; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G31120.2

Model type: Protein coding
Short Description: SHK1 binding protein 1
Curator Summary: Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Computational Description: PROTEIN ARGININE METHYLTRANSFERASE 5 (PRMT5); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR