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GT16162

CSHL Arabidopsis genetrap mutant lines

Original: GT16162

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16162

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14823331 [Map]; Strand: w
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16162 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATT GGGATGCAGC 
    AATTCGCCTA GTACGATATC TTAAAGGGAC TTGCGGACAA GGCTTATTAC 
    TAAGCAACGA TGATGATCTT CATCTAGATG CCTATTGTGA TTCAGATTTT 
    CAAACATGTC CAAAAACGCG TCGTTCACTG TCTGGTTATG TTGTCTTACT 
    CGGCAAATCC CCTATATGTT GGAAAACAAA GAAGCAAGAA CGGGTATCAC 
    TCTCTTCCAC TGAAGCTGAA TACAGAGCTA TGGCTTATAC TTATCAAGAA 
    CTCCTATGGC TCAAGGAGTT GCTTCTCATT TTTCAAGTTC CTCATCCAGA 
    ATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14823399 [Map]; Strand: w
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16162 - 5-prime edge 
    CTTTCTCCCT GATCCCAATG ACGTGTACGT GGTTGTCCGA GAAATTGCGC 
    TAGAAGATGA ACTAGATAGC AAAGGTCTGG TCGGGTGATA GAAAGATAAA 
    TCAACCGGCC AACTAACCTG CAGTATTTTG TTGGTTCATG ATAGACTTCA 
    CCGTCTTCTT TGGCTAGAGT ATGATTCTTT TCAATAGGAG TGTCAACGGG 
    TTTAGCTCCA AGAAGTCCGC ATTCAGAGAT GATATCCAAA GTATATTTGC 
    GTTGCGAAAT ATAAATCCCC TGCTTTCCTC TAGAGACTTC GATCCCAAGA 
    AAGAATTTTA GAGGACCTAA ATCTTTCATG TGAAAGCATT CACTCATATA 
    TGCTTTAAAC TCTGCAGTTA GCTTGATGTA AGGGGGAGTG ATTCCCCAGA 
    AGAATCTAGT GTCACTGAAA ACCCGGTTTC TCTTCCACCA CCGGATGTGT 
    CACATGAAAA GGATATACCG GTTTCAACGG TTGAGGCTAC ACAAACGCAG 
    AATCCGACCG TGTTGTTGGA AAATTCTCAT GATCCAGAAG AAGAAAGTGA 
    TGAATTGGGT AAAGGAAAAC GTCAAAAATT TACCTCCGTT CTTCTAAAAG 
    GTGATGAACC CCATCACGTC TCACCCGTCT TTGATCCAGT TTCCTCTTAT 
    GCGGTCCAAG GTACCACTTC TTATCCTCTT ACAAGTTACA TCTCTG

AT5G37381.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR