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GT16169

CSHL Arabidopsis genetrap mutant lines

Original: GT16169

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16169

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17622224 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16169 - 3-prime edge 
    TGAACGGTAG AGGTTTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    AGGTTCTATA CTGAGTTTTC AGTGTGTTCT TGGAGAACTA TCCATGTAAC 
    CAATGGAATA AAGCAGGAAT CTATTGTTAA TGCACGAATT AAACAAGTAC 
    GAAAATGGGA TCTCTAGGGA AGGAAGAAGA ATCTTTCTAT TAATGACGAG 
    CCCGCGACTT AGGTGAATTG GACGGATTAC AAAGGATGAT TTCTTCAACA 
    AGCATAAATG GAGTAAGAAC GAGCCGATTG TAGATGAAAG ACGAGCTTGA 
    GGCCGGAAGA CGATCTTGAT AGCTGAACCT TGTAAAAGGC TGCCTACGTA 
    CCCTTAGAAA GGGATCAAGC CACACGTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22223713 [Map]; Strand: w
      • AT3G60150.1 - [+] show detail - Protein of unknown function (DUF498/DUF598)
        Distance: 201; Region: intergenic
      • AT3G60160.1 - [+] show detail - multidrug resistance-associated protein 9
        Distance: 90; Region: intergenic
    Flanking Genome Sequence: GT16169 - 5-prime edge 
    AGGGGTACTG ATTCAAATGT TGAACTGAAT TTTCTTCGAT GCGCCATGCT 
    TCTAACCATG GAGCTCTCTC CATTTCTATG TTCAACTTAT GTAGTACTAA 
    ATAACTAGGG AGACTTTCAA CTTAAGCTTA ACTGTGGAAT TCATCTCACT 
    CGACAATCGG AGAATTTTTA TTATTTTTTA GAGACTGTTC AAGAAAATAT 
    TATTATCGGG CCTACAAATA ACTAATAATT TCTGAATATA CACTTGTATT 
    GCGGATATTT TCGGTAATCC AAAATATTTC AGTTCGGGAC TGATTCAATT 
    TCGGCTCTTC TGATTATAGT GCTTAGA

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G60150.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF498/DUF598)
Computational Description
Protein of unknown function (DUF498/DUF598); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT2G44525.1); Has 753 Blast hits to 753 proteins in 341 species: Archae - 0; Bacteria - 405; Metazoa - 118; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60160.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 9
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
Link
InterPro Scan - TAIR