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GT16170

CSHL Arabidopsis genetrap mutant lines

Original: GT16170

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16170

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 302792 [Map]; Strand: w
      • AT3G01850.1 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: -754; Region: promoter
      • AT3G01850.2 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: -754; Region: promoter
      • AT3G01860.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: respo...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G01860.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: respo...
        Distance: -926; Region: promoter
    Flanking Genome Sequence: GT16170 - 3-prime edge 
    AGAGAGAATT CCTGTGGTTT ACGAGAAGAA GTGAAGATAT GGGTTTAGAG 
    AATCTGAAAG GCATACAGAG ATGGCAAGAC GAATAATCAA AGATGAGAGG 
    AAAGAGAGAG AGTAGCTTTG GAATGGGAGG GCTTGGAAGT GAAGTAAATG 
    GACGACCCAA AAAGGAGTAG TTTCCGATTA GGTATGTGTC TTAATTGTCT 
    CTTCAGTGAA TTCTTATTTA GGTTATGGCT TCTTATTGGT CCTCACATTC 
    ATATTGTGGG CTCCCCTCCT TTAAAAATAA ATAATAATCA AATCTTCCTA 
    ATTTTCTGAT TAATTATTAG ACATTTTGAT GATGTTGTTG TGTTTCATGC 
    TCTCAGGTCT CACAAATGTA TGTCGCAATC GCGTCTAATT GGAAATATCT 
    AGATTTTTTT TTT

AT3G01850.1

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Computational Description
Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01850.2

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Computational Description
Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01860.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01860.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR