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GT16177

CSHL Arabidopsis genetrap mutant lines

Original: GT16177

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16177

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18400218 [Map]; Strand: w
      • AT4G39630.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -831; Region: promoter
      • AT4G39640.1 - [+] show detail - gamma-glutamyl transpeptidase 1
        Distance: 0; Region: intron1 (5UTR)
      • AT4G39640.2 - [+] show detail - gamma-glutamyl transpeptidase 1
        Distance: -349; Region: promoter
    Flanking Genome Sequence: GT16177 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTTGGA ATAACTTACA 
    TGAAAATCAA TAATTTATCC AAGAAAATCT CCAATATTAT TCATGAAGCT 
    TGTTACTAAA AATACCAAAC AGTCGAATTT TTAGGTGGGA TATTTCTGAA 
    TTTAGAGAAA CAAAATAACT TACATTTATA GGGACGTATC GTTCTTGACG 
    ACAACAAAGC GATTGTTCAG ACTCTCTGCC CAAAAGTTTC AAATGAGTTT 
    CTATGGAAGG TAGAGATGAG ATATAAAACT ATGATGTATA CGTTGAGGCC 
    AAGTCATTTA ATTATATGTC CATATAAGAG TTTCAAAAGT CTTTAATTAT 
    ACGTTGAAGC ACTTATTCAA CGGATAAAAG TTGGCCCACA CACGTGGCTA 
    AATTGGCTAT AGATGTAGAT TGATACCCTC GCCATTAATA TTAGAAAAAT 
    GGGGAATATT CTCCCATAAT TAGTTCAGTA ATAAGATCTC GATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18400282 [Map]; Strand: w
      • AT4G39630.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -895; Region: promoter
      • AT4G39640.1 - [+] show detail - gamma-glutamyl transpeptidase 1
        Distance: 0; Region: intron1 (5UTR)
      • AT4G39640.2 - [+] show detail - gamma-glutamyl transpeptidase 1
        Distance: -285; Region: promoter
    Flanking Genome Sequence: GT16177 - 5-prime edge 
    TCCTCCTACT TTCTCCCTGA TTCCAGTTTA TGAATTTCCC ACTCATCATA 
    TTTAGAAGAA CTTTGATTTT TTTTCTTGGG TGGCTTTTGG GTCAAAACAA 
    AAGAATGATA AAGTCTCATT ATTATTTTGA GCTTTTGTTC ATGTACTGTG 
    TGGTCAAAGA CAGTAACATA AAGTCTTTGT TGGCTTTGAG TTTTAGCGTA 
    TACGCGTAAG ACTGGTTTTA ACATTTTCAA TAGTTGACTA ATCTCTATTT 
    TCAATTTTGT TTTCGGGAAA GTTCGAGGAT TCTTCAAAAT TTATTGTTTA 
    TATGAATCTG TTTCTGTTTA AACGTTGAAC ATCATTTTCT TTTTGTGTTT 
    ATCCTCTGTG ATTAATCTCT TTGTTTGTTT CTCTATCAAT AGTAGCAATG 
    TCGCTGGTTC GAACAGTGAC GATCGTTCTT TTTATAATCG CGTTTCTGCA 
    AAACGCTGCG GCTCAGAAAA GACAGCAAAG TATTGTTAAG TCTCGCGGTG 
    CGGTTGCGAC AGATGATGGA CGGTGTTCTG TTATCGGGAT GCGTGTTCTT 
    CGTGAAGGAG GAAACGCGAT TGATGCGTCT GTGGCTGCTG CTCTGTGTTT 
    GGGCGTTGTA AGTCCCGCGT CTAGCGGTAT AGGCGGTGGA GCGTTTACAG 
    TGGTTAAGAT AGCTGGTGGG AAAGAAATTG CTTATGATTC TAGAGAAACC 
    GCTCCTCTAA GAGCCACTGA GGTAAAACGC GTTTTAGTAA TAATGTCTTT 
    CTTTATCCTC TGATCAAATA TGCGTTTTGT AATAAGCGTT TTCGTTAAAA 
    GTCTTTG

AT4G39630.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39640.1

Model type
Protein coding
Short Description
gamma-glutamyl transpeptidase 1
Curator Summary
The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.
Computational Description
gamma-glutamyl transpeptidase 1 (GGT1); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: response to oxidative stress, glutathione catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: gamma-glutamyl transpeptidase 2 (TAIR:AT4G39650.1); Has 9168 Blast hits to 9144 proteins in 1483 species: Archae - 86; Bacteria - 4247; Metazoa - 703; Fungi - 305; Plants - 110; Viruses - 1; Other Eukaryotes - 3716 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39640.2

Model type
Protein coding
Short Description
gamma-glutamyl transpeptidase 1
Curator Summary
The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.
Computational Description
gamma-glutamyl transpeptidase 1 (GGT1); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: response to oxidative stress, glutathione catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: gamma-glutamyl transpeptidase 2 (TAIR:AT4G39650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR