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GT16186

CSHL Arabidopsis genetrap mutant lines

Original: GT16186

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16186

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74510 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16186 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT 
    ACAGGTATTC TCAAACTGTG TGGCATCTTG TCTCGTCTCT CTTTCTCTTA 
    CCCTTGCTGA TTTTTGCATT TGTGTATTTT GAGTCAGAAA TATCGACTTG 
    CAAAGTATCT TCCAGATTCG TCTTCTGAAG GTAGTGTGGA CATTGATTTT 
    CTTCATCTTC ATCTCCCTCG ACCAAGTTTC CTATATACCT GAAAACTGGT 
    TTTTTCAATT TTCAGGGAAA AAAACTGATA AGAAAGAATC TGGAGATATG 
    CTCTCTGGGT TGGACGGCTC GTCGTACGTG AAATTTCCCT CTTTGAGCTT 
    GATTGGTGAT GCTATATATA TATTACCTCG CGCCGCAGAT TAAGTGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74566 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -954; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -954; Region: promoter
    Flanking Genome Sequence: GT16186 - 5-prime edge 
    TACTTTCTCC CTGCCTGTAA GTGACTCTTG ACATGATATA TAGTTAAGCC 
    TTGTACACCC ATCACTCTAA GAACGCCTTT GGGTGTAGCT CCTTTGGAAA 
    TCAAAGGAAG AAAAATGTTT AGGAACCCTA AGCAAACAGA CGATAGGCTT 
    TCCCTCTCAT GGATAGTAGT AAAGCATACA AGAAGAGCAA TTTGATTATA 
    TTGGTGTGCA TATTATTACC ACAGATATTG ATGAGGAAAA CATGAGTTAC 
    TAAATTTACC ATAGACTATA CAAGAAAAAA GGAAACTTAC TATCAGGGCC 
    ACCAAGTTGA GCAACGGCAT CAACGAAGCG TTCATGTAGC TCATGCGTCC 
    AACGCAGACG TTGTTTGGAT GCATGACTAG AATTGGGGCC TCCGTTGTCT 
    GCTTCCATCA GGGCTAAGAT ATAAACACGA TAAAGGGAAA GTAATGAGTA 
    GTGGCAAAGC TAGGAAATGA TAACATATGA GGACTGGCCA GAGAGAAAGA 
    GATAGAAATG GAAACAAGGA AGACGAAATA GCGCCCAGAA TTAGCTAGTA 
    AAAACAGTCC AAGTCAAGTT TAAGACTTGC TCCGGCAGAT CCACCACAGG 
    ACACCAAAAT CAGAGACATG TTCACTAAAA TCGGAGGAAT TTGTCGCCGA 
    GAAAGCAAAA AGAAAACACA ATCCAAGGTT ATGGAATCTA CGAACCTGTG 
    GGGTGGTGGA TCTATACACG ACGCCCCTCC ATTTTCGGAA CTTGCTCTTC 
    TCCAAGCTAA ATCTTATC

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR