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GT16192

CSHL Arabidopsis genetrap mutant lines

Original: GT16192

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16192

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 623988 [Map]; Strand: c
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 1043; Region: intergenic
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: 1104; Region: intergenic
    Flanking Genome Sequence: GT16192 - 5-prime edge 
    CCTACTTTCT CTCTGTCTCA CGAGGACCTA CTAAGAATAA AGCTAAGGAA 
    TCTTTATTCA AATAAACAAA TACCACGCGA AACATTAACG CGTAAATACA 
    CGCACGTCAA TCTCACGCGG TGGAACGCTC GGCTCTTTTA GTATGGGCTT 
    TAATGGGCCT GTATAGATTA ACTGGGCTAA TATTTTTAAA AGAAGGACTT 
    TTGTCTTGAG CCCAAAACGA AAATGAGTAA TTTGTTTTTG TTTTCTGATA 
    AAAAAAGAGT TTTCCTCAAA AGAAATGAGT AAATGACATA TTACTCAATA 
    ATTTACTGTA AAAATGACCA AATGGTTTGA CTTTGACCAA AAGTTGGAAA 
    AGATCAGAGT TGTTACCAGT CGATTATCTC TGACGTATGA TCTTGTCGTT 
    CACTCTTACA CACAATATTC AAATAATGTA TCATTGCTTT CTGAATAATA 
    TGTTTTTGTT TATATTGTTC TTGTATTACA GAATTTAAAC ATATTGATCG 
    GATTTGTTTT GCTTATGATG TTTAGATTTT TCCCGATTTT TTAATAAGCT 
    TTGAATACAA AAGTTAAATA TATGCGGAAA CCGATATATG AATTAAAATT 
    TCGAAAAAAG TAATGTGAGT GAGATAGGCT GAGTTTTACG TATTACAAGC 
    GAGACCGATG TGTCAATGAG ACTCTGACCA TAGGCTTCCC TTTTACGATG 
    CTTTTTTT

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR