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GT16198

CSHL Arabidopsis genetrap mutant lines

Original: GT16198

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16198

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3109674 [Map]; Strand: w
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16198 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GATAATCAGA CTACAAAAGA AATTCCAGAA 
    AGAAATAAAC TTGAAAACCA GTTTATAATA TTTCTCAATC AACGTCAGAA 
    CCCTAACATA CTTAAGCTCA AAAGCTTGGT TTCTCAGTAA ATCAGGAACT 
    AAACTGATAT CTAACAAGCC GGAGAGGAAA CTGTAAAGAA ACAGAGCATG 
    GACATTACAG ACAAAATGGG GGAAACCATA AACGACTCTA AACGATTACA 
    GAATAACGAC AATCAGAAGC AAAAACATAT AGTAACGAAA CATATGTATT 
    GAGTGAGATC ATGAAGATAA CCTTTAGAGA GGCTCTGCGA TGGGTAGAGA 
    GTTTTAGCGG CGATAAGAGT TTTAAGAGCA GAGATCCTAG AACCCTAATT 
    CGAGAGACGC ACCAATAATT AACTGGTTTC GTGAGAGAGG ACTTATAAAA 
    ATAAAATAAT GTCGACCAAA AGTCAAAAAA AACTTGACCC GGTTTTAATA 
    AGTGATCAGT TCAGTTAATC TCAGACCGAA CCGGTTCTTT AGTGTTTCGA 
    AAGAAGGTGG AGCCATCTCC ATTCCTCTAC CACGTGTAAC CGTTATAGAT 
    TTGTAACAAT TAAGACCTTT AGATTTTGTA ACGATCAAAG TTGCTAAAAA 
    AAAAAAAAT

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR