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GT16216

CSHL Arabidopsis genetrap mutant lines

Original: GT16216

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16216

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16216 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAA CTTAGAAGAA 
    CTTTTCATTT TTTTTTTTTT TTAAGGGGAA AAAAGTTTTT GTCCCCCCAT
    TTTTTTTTTT TCCAAAAAAA TTTTTCCAAT GGAAATCCAA TTTTTCCCCA
    AAAAATTTTC CCCAAAAAAA AACTTGGGGG GAAATGGGCC CCTTTTTTAA
    AACCCCCCCC CGAAAACCCC TGGTTTTGGC TTTTTTAAAC CTTTGGAAAA
    AAATTTTCCC CAAAAAAACC CCCCCCCCTT TTTTCCAATT TTTGGGTTTA
    AAAAACCTGG GAAAATGGGA AAAAAAAAAA ATGGTTTCGA CCGCTTACCC
    CAAGGGGGGG GCCCCCGGGG TTTTAAAAAT TTTCCCTTTT AAAAAAAAAA
    AACCCTTTCC CCCCGGGGAA AAAAATTGGA ATTTTGCCTT GGGAAAAAAA
    AACCCCCGGG ATAAAGGGTT TCCCCCCCCC AAAACCCAAA ATTTTCCCCA
    AATGGACCCC CTCCTTTTTC CCCAAAAAAA TGCCCCCCAT TGGAAACCAG
    GGCCCCCTTT GGAAAAACCC AAAACCTTTT GGTTTTTAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7472185 [Map]; Strand: w
      • AT3G21260.3 - [+] show detail - Glycolipid transfer protein (GLTP) family protein
        Distance: -6400; Region: intergenic
      • AT3G21270.1 - [+] show detail - DOF zinc finger protein 2
        Distance: -2494; Region: intergenic
    Flanking Genome Sequence: GT16216 - 5-prime edge
    CCTACTTTCT CCCTGCATAT ACTAGAGGTC CCTAACATGG CAGCAATTCT 
    AATGATCCCA AACACAAGGT GAGTAGCAAG AATTTTTTGT CGTCTGCTCG
    AGGTTAGCGA GAGGCAAGCA TTCACCTCTC CTCCTGAGAG GTTGTGTGAC
    CATGTCATGA CTGCAACTCG AGCGAATGTT TTCAAATCAC TTCATGTGTA
    GAGAAAATAT TGAAGAAAAG ATGTTATGGT TCGTTCTACT TAATTGTTTT
    GTTCTTTGTA AGATATTGGA TCACATTTAA GGAACACATT TTGGTCTGGG
    ATCTGTTTCT CTAACTTTTC CTAAATACTC AATGGACCTT GTGAGAGATT
    GTTCTTACTT ATGGTGTAGT ATCCATATTT TACATACCTC ACTGAAATTA
    TACCAAAATA GAATCTAGAA ACCAATATTA TGCTTACTAT ATGTAGCACT
    AAATTCTGT

AT3G21260.3

Model type
Protein coding
Short Description
Glycolipid transfer protein (GLTP) family protein
Computational Description
Glycolipid transfer protein (GLTP) family protein; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid transfer protein 2 (TAIR:AT1G21360.1); Has 501 Blast hits to 501 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 110; Plants - 118; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G21270.1

Model type
Protein coding
Short Description
DOF zinc finger protein 2
Curator Summary
Encodes Dof zinc finger protein adof2.
Computational Description
DOF zinc finger protein 2 (DOF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1111 Blast hits to 1102 proteins in 62 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 4; Plants - 1092; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR