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GT16217

CSHL Arabidopsis genetrap mutant lines

Original: GT16217

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16217

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662637 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -20; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: -180; Region: promoter
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: -207; Region: promoter
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: -207; Region: promoter
    Flanking Genome Sequence: GT16217 - 3-prime edge 
    TGAAACGGTA GAGGTTTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT 
    CCACAAGCAA AAATCAAAGA AAGATCTTTT CTTCTCGCAA TAATCATCAT 
    TTTAATAAAT TATATTTAGC GCCGAGAAAT GGCTAAACCA ATCAAACCGT 
    CGTGGGCTCG AGATTCAATT ATTGATTGCT GGCTTTTAAT TTGGAATACC 
    GGAGTTCGGT TGAGAATTGG ACCGGTTCAA TAAAGCCAAC AAGTTTCTTC 
    TTCCTTATCG CGATTATTGG AGGAGAGAAT GAGTTGGTCT CTCTGCAGCA 
    CCCATGGGGT CTCCTCTTCC ATAGCTCTCA CTTATGGCTT TCGCCATAGA 
    AGAAGATCCA CCTTCCGTAT TTTCGCCACC TCTGACGGAT TAGAACCCAA 
    GGACGACCCG CCGGAATCTC CTCTCCCTTC CTCATCCTCT GCTCTCGGAA 
    AAGACTTGAA AAAGGTCCGC CTTTTTTCTA TATCATTTAC GATTTTTCTG 
    TTGAAACCAT AGGAAGACAT GAAAATGAAA ATGCACCATG TTAGATTGGT 
    CTCTAGTGCT TGAACCTGTT GAAAGAGTTG CTCAAGCTTA TGACTTTTCA 
    ATTCAAGCAG GTTGTTAACA AGACTGCTGC AACCTTTGCC CCTAGAGCTT 
    CCACCGCCAG TAAAAACCCT GCTCTCCCTG GAACTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19559788 [Map]; Strand: w
      • AT2G47720.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 2649; Region: intergenic
      • AT2G47740.1 - [+] show detail - pre-tRNA
        Distance: 67; Region: intergenic
    Flanking Genome Sequence: GT16217 - 5-prime edge 
    TCTCTTGCGA TGAGGATCAT GACTCAGTAC ATTCCTAAAC TATTCTCGTA 
    TCCACTGAGT TACTCGTACA AATCCATAAA TGACCATACA AAGTAGCCTC 
    TCGTGTGAAA ATAGTGATAA CAATTAAAAA TGAAAAAATG CGCATCCAGG 
    GAATCGAACC CTGGTCAGTA CCGTGGGAGG GTACTATGAT ACCACTACAC 
    CAGATGCGCT TTTTATTATG CTGACAAGTT TTTTATTATT AACTCTAACA 
    TTTGTTCTGC CGGGAAAGTT TCCTGATGAT AGTAAGAAAC AGAGCAACTC 
    GAAAGAGAAG ACAATGGCGC GAGGAGGATT TGAAGATAAC GAAACCAGAG 
    AAAGCCTGCA CTGAAGTTAG AAAACGGTGA AGGAAGAAGA AGAAACAGAG 
    TAGAGGAAGT GGTAACGCCG TAGCGGTGAA GCAACGACGT CCGTCTTAAG 
    TCGATAAAAT TTCTTATAAA TATGTTTTAT GGAAATTTGG AAAACTAACC 
    TTAAAAAAAA CTATAATTAA GAAAGTAACA CTAACAAAAA AATGAGATGA 
    TATTTTTTAT ATTTTATATA TTAATCACAA CTTTACCCTC CTTCCCTTCT 
    CTCTCTCTTT CTCCGCTTTG TCTCCCTACT TCTTTTTTTT TCTCTCTCCT 
    TCTCTACCTC TCTCCTTCTC TCCCTTT

AT2G47720.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47740.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: CCC)
Link
InterPro Scan - TAIR

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR