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GT16227

CSHL Arabidopsis genetrap mutant lines

Original: GT16227

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16227

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 223641 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 223; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 515; Region: intergenic
    Flanking Genome Sequence: GT16227 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTACGA 
    CCATAACTCT TTAATTGACT CTATTGTTTC TGCAACTCAA AAGATCTCTG
    TCCCACGTTT TCTTTTGCCC TGGTACAATT ACGATAGGAC AGAGATAGTT
    TTGTCCCATT CCTCCAATCA CAATAACATT TCAAACAAAA TCCAATGGTC
    ACTTATTTCT CAAACTTTCT TCTACCTCTT TAACTGTTTA TGAGTCCTTA
    CTCTTGTGTC TAATTACTGT GAATTCAAAG AAACATCAAG TAATCACTGT
    CACACTTTAT TGACCACAGA GTTTGGTTAT TTAAAGACAG AACTACAGAG
    ACCAAGAAGA AACAAATTGT ATTTCAACAA GTAAACGACA CAAGAAGGCC
    CTTTTAGCCA TGTTCTTATT ACTGTTCATA GTTCTCACAA AGATAGTGAT
    CTTAAAAGAA ATTTGATAAA CAGTAACTCA CAGTGTTTTT CCACGACTGG
    CTTGAATCAA GGAAGAACAT AGAGAGGCTC CGGCATTTTT GCTCTTTGTA
    TCCTAGCATA TAGTTAAATT GTAAAACATT CCATGTTAAA AGAACAAAGA
    ACAAACTGAA AAGACTTGGA ATGAAATGAG GAAAACTTAA ATAAAAGGCT
    TACCAGTTGT CTTTTGCCCA TTTACATCCA TCAGATTCTA CTACATGTAA
    GCTATAGGCA TGTCTTGACT TCGAGGATAG ATTCTCGAAA CTGCATCTCA
    AAATCCACAT TGAAGAAGAC ATGATTTTTC AGAGCTCAGC CAAATCTAAA
    CTA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 223699 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 281; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 457; Region: intergenic
    Flanking Genome Sequence: GT16227 - 5-prime edge
    CCTACTTTCT CCCTGGTCGT AGTGATTATG CTTTGTGTAG TTGTCTTTTG 
    GAAGTGTTCT TGATCCTCTC TCTCTCAGAA AGCAATTTGT CATACATTCA
    TGATCTTAAA AGTACAAAAG ATGGGTCGAT GTTCTGTTTC TGTTAAATTA
    TTATTTCAGG ATTTTGCACA AAAACCCTCG GAAACTATAG ACATTATGAG
    TAATCCTTTA TGTGATTAAA GACCATTTGA ACAACACATA TCTATGAGTA
    AACTCTTTTG TTTCCATTAA ATTCAAAAAA TAAATGAGGA ATAGGCAAAA
    CATTAAAGAT GTTTTGTCTT CATTCCATCA AAACTCAAAT GTAGCCTCAA
    CGGTACGCAC TTTTTTGATA ATAAACCTCA CATTTGCTAA ATTCTCTGAA
    AAATCTAAAG TGGTTCTAAA CACAGTGCAA TGTCAGCATC GAATGTCTCT
    CTCAGAGAGT CGCATATAAA ATTGCAGTGG AACAAGAAAA GAAAGAAGAA
    AGCATGTGAA CAAGTAGAAA AACATCAATT ACTAACAAAC ATCTAATTAA
    TATATATTCC TTACATTGAC AAGGAACCAT CGAAGCTTTC AGTTTCACTT
    TCAGACATAT GTATAGATAG TTGCAACTCC AAACCCAAGC CCCAACATGG
    TCCACCTTCT CATTTGGGTA ATAACTAACA ATAATAATCT TCAAACGCTC
    CTATATAACA TTTACTACAC GTCTCCATCT TCAAACGCTT CTCTTCTATT
    ATAAGAACAC ATCACTTAC

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR