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GT16229

CSHL Arabidopsis genetrap mutant lines

Original: GT16229

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16229

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 223735 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 317; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 421; Region: intergenic
    Flanking Genome Sequence: GT16229 - 5-prime edge
    TGTAGTTGTC TTTTGGAATG TTCTTGATCC TCTCTCTCTC AGAAAGAATT 
    TGACATACAT TCATGATCTT AAAAGTACAA AAGATGGGTC GATGTTCTGT
    TTCTGTTAAA TTATTATTTC AGGATTTTGC ACAAAAACCC TCGGAAACTA
    TAGACATTAT GAGTAATCCT TTATGTGATT AAAGACCATT TGAACAACAC
    ATATCTATGA GTAAACTCTT TTGTTTCCAT TAAATTCAAA AAATAAATGA
    GGAATAGGCA AAACATTAAA GATGTTTTGT CTTCATTCCA TCAAAACTCA
    AATGTAACCT CAACGGTACG CACTTTTTTG A

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR