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GT16235

CSHL Arabidopsis genetrap mutant lines

Original: GT16235

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16235

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18633423 [Map]; Strand: c
      • AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2711; Region: intergenic
      • AT2G45200.1 - [+] show detail - golgi snare 12
        Distance: 4080; Region: intergenic
    Flanking Genome Sequence: GT16235 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAAT 
    CAGCTACTAT TTATTGCCTC ACAATTAATA ACATTTAAGT GGTCATATAA 
    GTGTTTGACA AAGAAAAAAA GGTGGTTATA TCGGTAAAAG GTCGACCAAA 
    GATGCAAATA TAAAAGGCGG AAGTTTTGAG TATTAAGGCG TGCATAATTT 
    TTGGTTATAA GGAAGGAAAC GTTGAAAATG TTGGTCTGAT CATACTTTAC 
    TAGAAACGTA TATAATGTTA GGGTTAGCCC ACACTTTTGT CGCAATTTGG 
    GCGATGGGAA TGCAGAGATA GTACACACAT GTATTGGAAA TTTAAATGTT 
    TATATACATG CATGTATGTG TGTTCTGAGA TCATAGGCGT GACATTGACA 
    TTTCCCTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18633369 [Map]; Strand: c
      • AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2657; Region: intergenic
      • AT2G45200.1 - [+] show detail - golgi snare 12
        Distance: 4134; Region: intergenic
    Flanking Genome Sequence: GT16235 - 5-prime edge 
    CCTACTTTCT CCCTGAGCTG ATTGCAATAT TTCGGAGCTT GATTCTTCAT 
    ACGTTAAGTT ATGCTGAATT TACAAAATAA TGTGTTTTTT TCGGTAACCG 
    AATGTTAGGG ATTGCACAAC CATATGAATA ATTGCTTGTG AGATTACGAA 
    ATATTAACTA ACTTAACCAC TTAAATGTTG TTTGGGGGCA GGAAATACTA 
    GTAGCAATAA CACGATTGAT TTTGCATTAC ATAATCTAAT TCTATGATTC 
    TTCGGATCGA TTAGTAACAA ATACTAATTA ATATTGATAT ACAAGCTAAG 
    GAGTTATTTT CAATTGGTTG GACAAAACAT ATATGATATA TGCATTGCAT 
    CATTTTCGCA AGTAGGTGCA TAGATATTTT CTTAGACATC TATACTTGAA 
    ATGAGAATGG AATATTATAT AAAATCATAT GTAGGTTTGA AATTAATTAC 
    GTGTGGAGTT TTGCTCGTGG CTTTCACCAA TATGGTGTTC CTATATATAC 
    GTACA

AT2G45190.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).
Computational Description
ABNORMAL FLORAL ORGANS (AFO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT4G00180.1); Has 454 Blast hits to 452 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 436; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45200.1

Model type
Protein coding
Short Description
golgi snare 12
Curator Summary
Encodes a member of the GOS1 (Golgi SNARE) gene family.
Computational Description
golgi snare 12 (GOS12); FUNCTIONS IN: SNARE binding; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: cytosol, integral to membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: golgi snare 11 (TAIR:AT1G15880.1); Has 416 Blast hits to 416 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 132; Plants - 101; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR