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GT16246

CSHL Arabidopsis genetrap mutant lines

Original: GT16246

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16246

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29006193 [Map]; Strand: w
      • AT1G77200.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1102; Region: intergenic
      • AT1G77210.1 - [+] show detail - sugar transporter 14
        Distance: 2746; Region: intergenic
    Flanking Genome Sequence: GT16246 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    TATTTGCATT TTTATTAACG TAAACCCGAC TTTCTAGACT AGAGAGAGCT
    CATATTTTTT GTACTAGAAA GGTGTAAGCA ACTAATATCT ATGCATCAAA
    GATGAATGAA AAAGACCAAA GTTTTGGCCA AAAAAATGAA AATTAAAGAG
    ACCAAACATG TTATACTAAT ATATTATGTG TAGTATTTCA TAATTTCTTG
    ATTCGAACTT TGATCTAGTT GGGGAACTCG GCTTCCATCG AAAGACATTC
    ATTTCCCACT ACAATGTATA ATTTTTTATT TTTCGAAAGA TACAAGACGA
    CAAACAAACA CACACACACA TATATATATA TATA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29006245 [Map]; Strand: w
      • AT1G77200.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1154; Region: intergenic
      • AT1G77210.1 - [+] show detail - sugar transporter 14
        Distance: 2694; Region: intergenic
    Flanking Genome Sequence: GT16246 - 5-prime edge
    ATCCTACTTT ATCCCTGCAA TAAACAGATC ATAGAGTATG ATTTACTTAC 
    TTGTTTTGGG GTTAGAAATG ATGAGAATTG AGAGGAAGGG AAGAGGAAAA
    GAGATAATTA AGAGAGACCC ACAAGGAGTG AAGGCTGTTT GCCCCCACTC
    AGAGCATGGC ATTTCTGACA GTTGTCAACA CCCTTCCCAC ATGCCTTCTT
    TTTAATCTCC TCTAATTTTC ATTTTTCTTA TCATCATTCT TCCATACATT
    CGATATTTAA TGTTCATTTA CCACATTTTT ATATCATTAT TTAACACATT
    TCCGTATTTT ATTTACCAGC TCTTCTTCTT CATAGCACCC GAGAAGGGCA
    TTATTAATCT AGCTTTAGTA TTTTTATGAT GTTGACGTTT TAGTACCTGA
    GAGTATCATT TGAATGTAAC CTTTATGATC TTAATTACTG CTAGAACTTA
    GCCATTCTAC TTGTTCATAA TAATAGTATC GTTACGTTTT AACTCTCACC
    AATACCAAAG GAAGAACTTT GACAAACAAA ACAAAAAT

AT1G77200.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G32800.1); Has 5976 Blast hits to 5749 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 21; Plants - 5816; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77210.1

Model type
Protein coding
Short Description
sugar transporter 14
Curator Summary
AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.
Computational Description
sugar transport protein 14 (STP14); FUNCTIONS IN: galactose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 28233 Blast hits to 27797 proteins in 1954 species: Archae - 451; Bacteria - 13247; Metazoa - 4056; Fungi - 6843; Plants - 2415; Viruses - 0; Other Eukaryotes - 1221 (source: NCBI BLink).
Link
InterPro Scan - TAIR