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GT16254

CSHL Arabidopsis genetrap mutant lines

Original: GT16254

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16254

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10529795 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16254 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCC 
    AAAAGAGCCA CGACATTTGA CTGAACCACA GAGACAAATG TTCTTGCCTT 
    TATAAATTAC TTCGTCTTCT CCAGTCTTCT CCACACAAGA AACTCCATAG 
    TCATATGTTA ACTCTGTCAT TGGAGGAATG TGCTTCACCG ACCAACATTT 
    CCTTTCTCCT TGGCGCTTAT CAAGACTTGC GTTGGAAGAT TAGCATCTTC 
    AGAGACTTGT TCGCAAGCAT CTTCACACAA AAGCTCCAGT TCATAGTTCC 
    ATCTGAAGCT ATGATAAATC TGAGATGTGT CGAACAAGTA TTCGTCATCT 
    TCTTCTACTT CTTCTTTTGT CTTGCTCACA CCGGCAAACT CGCAGATAAA 
    AGTTCCAGCT CGGATTGGAT CCCAAGAACG TAAACCCCAA CCACAGTTTG 
    ATGTCTTAAA CACTTCCAAG TGGAGCTTCA AACCGGTTTC AA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16254 - 5-prime edge 
    TCCTACTTTC TCCCTGCTTT TGGCTGATTT GGAGGACTTT GTATCATTTG 
    TTTTTTCCTT CTTTTTTTAG CTTCCTTGCT ATCTTTCTAG TATTTGCTTT 
    TTTGTGTGTG TGTGTTTTTT TTTTTTGGGG GGGGCCTTTA AATCCCCTTT 
    TCCCTTGGGT CCCCCCAAAA AAAAAAAAAA AGGGGGGAAT TTGAAATTAA 
    CCTTTCCCGG GGGGGAAAAC TTTTAAAAGG GCCCAAACCT AAAATTTTAA 
    AAAAATTTTG CCTTTAAAAA AAAAACCCCC CCTTTCCGGG GTCCTTTTTC 
    CAAACCCCAA AAGGGGAAAA TTTTTTCCCC AATTTAAAAA AGAAGCCTTT 
    TTTCCCCCAC CCGGAAGGGA AAAAAAAAAT TTTTTGCCCC AAGGGGCCCT 
    TCCCCCCAAA AAAATTTTGC CCCCTTTCCC CCAAAAATGG GGGGAAAACC 
    TTTTTCATTT TCCTAAAGCC CCCTCTTTTT GAAAACCGGG GGGAACCCCA 
    TTTC

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR