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GT16268

CSHL Arabidopsis genetrap mutant lines

Original: GT16268

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16268

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13875853 [Map]; Strand: c
      • AT4G27860.2 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT16268 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATCTCCA 
    GAAGAAGGAG AAGGAGAAGA AGATCGATAC GAGGAAGTAC TCGGGAGAAG 
    AGAGTATTCG AGGATTCACA GAGTGATCGC AATCTCTTCT TTCGTCATCT 
    TCGGATTGAT CCCACCTTTA GTATACGGTT TCTCGTTTCG AAAAAAGATG 
    GAAAAGAGAC AAGAGTACAA GGTTTTAGCT GTTTACGCAG TGTCTCTACT 
    CTGCATCGTC TTGCTCTCAA TAGCGAAAGC TTACGTGTCG AAGAAACGCG 
    ATTATGTCAA GACTCTGTTT CGGTACACGA CGATGGCGAC GACGGCGTCG 
    GGATTCTCTC AATTTGTGGG ATACTTGGTG AGTCAATGGC TTGAGAAAAA 
    GCGGGTTTTA TGATGATTCT CCAGAAACTC AACGAGTTTG AAACGAGTTC 
    TTGTTCGTCT TCTCTTCACT TCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11818145 [Map]; Strand: w
      • AT2G27720.1 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -346; Region: promoter
      • AT2G27720.2 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -551; Region: promoter
      • AT2G27720.3 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -551; Region: promoter
    Flanking Genome Sequence: GT16268 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTTT 
    AGCATAGTCT AGTTATTTTC TCATACGAAT TATGATGTAT TTACATATTG 
    GACGGGATTG AAGGGGGAAC AATTCAAGAC TAGAAATTTT TTTTTATCCT 
    TTTCTTACAA TAATACTATT CTTGAAGTCA TACGTAAGCC GAATCTGAAT 
    CTAGGTTCCA AATGAACGAC AACGTATCAT TAGCAAAGTC AAGGCTAGAG 
    GTATCTCATC ACCATTCGAG TCAAGATTTA AGACCATGAC TAGGACCATT 
    GCTTTTGTTG GCTACTAAAA ACTCCAGAGT GACAAAGGCG ATTGAGATAG 
    AAGCAGAAAT GCTAACAACA AAGTGCAAAT GACATTCGGG TCAAAAACTC 
    TTGAGAATTT CAGCAATGTC TAAAAAAGAT GATCGAATAC AAACTAAACA 
    ACAACAACAT ATAGATTTCA AAAGGTCACA ATATTAAAAG AGGACAACAA 
    AACCGGACTT TTCATGCTAC TACCAGCTTA CTCGAATAGA CTGAAACCCA 
    TGTCCTGCAA ATTAAAAACA AAAACACACA CAAGTGAGCC ATCATTTTTA 
    GGTTAAATTT CAAGCTACTA TTAAGATCAA GACTTTTGTT AGAAGGAAAG 
    TAAACTTACA TCATCGGATC TTCCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11818202 [Map]; Strand: w
      • AT2G27720.1 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -289; Region: promoter
      • AT2G27720.2 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -494; Region: promoter
      • AT2G27720.3 - [+] show detail - 60S acidic ribosomal protein family
        Distance: -494; Region: promoter
    Flanking Genome Sequence: GT16268 - 5-prime edge 
    CCTACTTTCT CCCTGGCTAA ACTTTGACAC CACAAATTTA TTAGTAACTT 
    GCAAAACATA TCACTTGTCA ACTACATATA CCGAGAAATG CCATACGCAG 
    GCGATGTTTC GGAAACAACA GGTGTAGAGT TGAAGCTACT TTTGATGTCA 
    TCGACCAAGA AGGTGCTATA GAAGACGAGG TTAGAGGTGA AATCCCATCC 
    ATCAAACAAA ATAAAACTAG AGAATTGTAT AATCTGGTCG TTCTCTTCTC 
    AACATCAATA TTACCCGTCA ATCGAAATAT TGAGCCCATA AAAATATGGG 
    CTTGAAAGAA CTGGGCCTAA ATAAAATTTT AAATTCGGAG ATACATTGAT 
    AAGATTAAAA ACCCTAAGCG TATATAAATC ATATAGTTTT CATTTTTTCG

AT2G27720.1

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1976 Blast hits to 1975 proteins in 364 species: Archae - 32; Bacteria - 0; Metazoa - 785; Fungi - 446; Plants - 440; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G27720.2

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1841 Blast hits to 1840 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 418; Plants - 417; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G27720.3

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1851 Blast hits to 1850 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 772; Fungi - 418; Plants - 417; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27860.1

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27860.2

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: embryo, hypocotyl, root, pedicel, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1).
Link
InterPro Scan - TAIR