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GT16273

CSHL Arabidopsis genetrap mutant lines

Original: GT16273

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16273

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8948825 [Map]; Strand: w
      • AT2G20780.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G20784.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -796; Region: promoter
    Flanking Genome Sequence: GT16273 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCGGTGCGGT GTTGTTCATA 
    CAGCAGGATC TCAAAATAAC GGAGGTGCAG ACGGAAGTGC TCATTGGTAG 
    CCTTAGCATC ATCTCACTCT TTGGCAGCTT AGCCGGCGGC AGAACCTCTG 
    ACTCTATCGG TAGAAAATGG ACCATGGCCT TGGCTGCTCT CGTCTTCCAG 
    ACTGGTGCTG CCGTGATGGC TGTCGCTCCG TCTTTCGAGG TTTTGATGAT 
    AGGGAGAACT TTAGCCGGCA TTGGGATTGG GCTTGGTGTC ATGATCGCTC 
    CTGTCTACAT CGCCGAGATA TCCCCCACCG TAGCTAGAGG ATTTTTCACT 
    TCGTTCCCTG AGATCTTCAT AAATCTAGGG ATCTTGCTGG GCTATGTTTC 
    GAACTACGCT TTCTCGGGGC TTTCCGTGCA TATCAGCTGG AGGATCATGC 
    TTGCAGTTGG GATTCTTCCT TCGGTGTTCA TAGGATTTGC GCTGTGTGTG 
    ATCCCTGAGT CGCCGAGGTG GCTGGTGATG AAAGGCCGAG TGGACAGTGC 
    ACGAGAGGTG CTCATGAAAA CGAATGAGCG AGATGACGAA GCGGAAGAGC 
    GGCTTGCAGA GATACAACTG GCGGCTGCAC ATACAGAAGG CAGCGAGGAC 
    AGGCCCCGTG TGGCGTGAGC TTCTTAGCCC ATCTCCTGTT GTACGGAAAA 
    TGCTGATTGT TGG

AT2G20780.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 5 (TAIR:AT3G18830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20784.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR