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GT16291

CSHL Arabidopsis genetrap mutant lines

Original: GT16291

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16291

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1303774 [Map]; Strand: w
      • AT4G02930.1 - [+] show detail - GTP binding Elongation factor Tu family protein
        Distance: -5370; Region: intergenic
      • AT4G02940.1 - [+] show detail - oxidoreductase, 2OG-Fe(II) oxygenase family protein
        Distance: -2729; Region: intergenic
    Flanking Genome Sequence: GT16291 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTTTT 
    TGGAGTATTT GTCTAAATTC TAAACTAGCA TGTTATTGAT TACATTATTA 
    CCCTCTCAAA ATTGAATATT TACTCTTCCA CCATTTTATA TTTGTCGTCG 
    GCAAAAACTC ACTTTTTTGT TTGCTACTTC ATTCTCTCAA CATGCTTTCT 
    ATTTTAACAT TTCTTGCTAC TGAAGAGAAA TGAGAAAATA GGGGTTTTCA 
    CCCTTTCTTG TGGCGTTACT CGATCGCTAA CACTCGAATT GGTGTAAGCT 
    CATGGGCAAA AGAT

AT4G02930.1

Model type
Protein coding
Short Description
GTP binding Elongation factor Tu family protein
Computational Description
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02940.1

Model type
Protein coding
Short Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Computational Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G48080.1); Has 217 Blast hits to 213 proteins in 52 species: Archae - 0; Bacteria - 14; Metazoa - 24; Fungi - 16; Plants - 131; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR