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GT16292

CSHL Arabidopsis genetrap mutant lines

Original: GT16292

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16292

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13385905 [Map]; Strand: c
      • AT2G31390.1 - [+] show detail - pfkB-like carbohydrate kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16292 - 3-prime edge
    GTAGAGGTTT TTACCGACCG GTACCGACCG GTTTCATCCA TTCCCAGCCA 
    ACAATATGAC CGAACTCGTC GTCTCCAAGT TTTCCGACCA AAGCAGATCG
    TCCACTTCGA CTAGAAACAA CGATTGCGAC GTTAGCGGGA GCACCACCTG
    GAGCTTTGAG GAATCCAGGA GCTTCGGCGA GTGAGACGCC TGATTCGGTA
    GGGACGAAAT CGATTAGCAT CTCGCCGAAG CTAACGATCA GTCCTTTATC
    ACCGTTGGAT GCCATTAGAT CAGAGATCTG TGAAATCGTT GGATCAAATC
    GGAGAATTGA GAAAAATATA GAGAGTAAGG AAGGACAAGG AGAAGAATAT
    ATAAAAATGA GAGGAAGGAG AAGAATGGTT TATATAGAGA ACAATGGGAC
    TGGTGTACAA GGCTTGCTAC TGATATATTA TTAACGTATT TTATTATAGG
    TTTACAAAAA AATCATAAAT CTACAAATAT ATCTTGTAAA AAAAACCATG
    AGTTTTTGTG TTTTTTTTAA TAAAATGAAA AAATCTTGTA ACGTTTTTCG
    ACCTTTGCCT GAGTATTTGA TTTGATCAGA AAAATAAAAT AAAAAAATCG
    TGTATGAATA TA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3681657 [Map]; Strand: c
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: -733; Region: promoter
      • AT1G11050.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -231; Region: promoter
    Flanking Genome Sequence: GT16292 - 5-prime edge
    TTTTCTTTCT CCCTGCTTGT CCCCACCTGC AACTGCCACA CTAACGATGA 
    ATGAAACATA TTCCATAGTG GCTACGTTTC ACTTTCGTTT TTAATGTTAA
    ATGTGGGAAA ATTGAAAAAG CAAAATTAAT AGATAGTACT AGGATTATAA
    AATTTTGACA AAATTAATGG GACAAAAATT TCAGACGGTA AGACAAAAGA
    GAAAACTGAA TAAAGGTCAA CTAGAGATAT CATTTTAAAC AGTCGACTAA
    ATTATCAAAT TAGACTCTTT ACGTGTAGAG TTGTTATTAT TGCTTGCTGA
    TGGAAATGGG GATCCACTAT TGCGGATAAA AATAACA

AT1G11040.1

Model type
Protein coding
Short Description
HSP40/DnaJ peptide-binding protein
Computational Description
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11050.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31390.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 18509 Blast hits to 18503 proteins in 2397 species: Archae - 386; Bacteria - 14053; Metazoa - 143; Fungi - 116; Plants - 466; Viruses - 0; Other Eukaryotes - 3345 (source: NCBI BLink).
Link
InterPro Scan - TAIR