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GT16296

CSHL Arabidopsis genetrap mutant lines

Original: GT16296

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16296

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8156271 [Map]; Strand: c
      • AT3G22970.2 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 2122; Region: intergenic
      • AT3G22980.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: 3885; Region: intergenic
    Flanking Genome Sequence: GT16296 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCTAAGTGAC TACAAAAGAA CAAAAACACC ACGTTTAATG GGTAAATCTA 
    GAATATGATT TTAGCCGATC GTGTACATTT TTTGTTTGAA ATTTTTATAT 
    ATCCTATTTG ATACGTTTCA TTTTTTTTTG TTCTTCTCAC TCGACCACAA 
    GGAAACATGA TCTTCACTTC AAATTATACA CTTACAAAAA AAAATTAGGG 
    ATATTAAGTC ACTAAATTGC CATGTCTTGT CAAAACTTTT AAAACGGAAA 
    ACAAAAATTG GGGGTTTGGA AATAGTAAAA GGTCTTTTTT CCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8156222 [Map]; Strand: c
      • AT3G22970.2 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 2073; Region: intergenic
      • AT3G22980.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: 3934; Region: intergenic
    Flanking Genome Sequence: GT16296 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG CTTAGAGGCG ATTTTTAGTC CCCCAAAAAT 
    GTAGAGGATG TTGATTTTAC CAAATTGGTT AAATGACTTA GGTAATTAAT 
    CTTTAGAAAT TATAGATGAC GAGTTGTTGG CTATGGTTAA GTTCCTTAGT 
    TGTAAACTTT TGGATTGGAA GAGGGATAAA TGTATCACAA ATTCACGATT 
    AATTCACCCT TGCAAATATA ATGTAAAAAA AAATATATTT ATTTATTGTA 
    AAAATACAAT AGTGAATCTA CATTTAGATA AGTTGCGGCA AAAGGTCCTA 
    ATATTTATAT GGAGGGGTTT AGAGTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8156207 [Map]; Strand: c
      • AT3G22970.2 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 2058; Region: intergenic
      • AT3G22980.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: 3949; Region: intergenic
    Flanking Genome Sequence: GT16296 - 5-prime edge 
    CCCTGCTTAG AGGCGATTTT TAGTCCCCAA CAAATGTAGA GGATGTTGAT 
    TTTACCAAAT TGGTTAAATG ACTTAGGTAA TTAATCTTTA CAAATTATAG 
    ATGACGAGTT GTTGGCTATG GTTAAGTTCC ATAGACGTAT ACTTAAGGAT 
    TGGAAGAGGG ATAAATGTAT CACAAATTCA CGATTAATTC ACCGTTGCAA 
    ATATAATGGA AAAAAAAAAT ATATATCATA ATGTAAAAAT ACAATACTGA 
    ATCTACAATT AGATAAGTTG CGGAAAAATG CCCAAAAATG AAAATGGAGG 
    GGTCAAGA

AT3G22970.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22980.1

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 75542 Blast hits to 60298 proteins in 6538 species: Archae - 1481; Bacteria - 47710; Metazoa - 4520; Fungi - 3401; Plants - 1472; Viruses - 1; Other Eukaryotes - 16957 (source: NCBI BLink).
Link
InterPro Scan - TAIR