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GT16318

CSHL Arabidopsis genetrap mutant lines

Original: GT16318

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16318

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19608131 [Map]; Strand: w
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16318 - 3-prime edge 
    CGGTAGAGTA TTTTACCGAC CGTTACCGAC CGTTTTGCTT ATGTAAAAGC 
    CATATCTTAA TTGCATTCTA GGTACTGAAT GACGTTAAAG TGACGACATA 
    TTTGCTTAGA CAAAGTCAAA TACATTTTAT TTCTTGGGGA AGAAGCTGGA 
    AACCTACACT CTCTTCACCT TCCCGTGCCT TTCTTTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19608226 [Map]; Strand: w
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16318 - 5-prime edge 
    TTTGGTTTTG TTGCCCCAAA TATCCCAAGA AAAGATCAAC TTCTTCTTCT 
    TACCAAAACT GTCGGCGTCG TCTCCTCTAA GCTCCTCCCA TGGAAGCAGA 
    AGAAGGTCAT CAGCGTGACC GCCTCTGCGA CTATTGCGAC TCCTCCGTGG 
    CTCTTGTCTA CTGCAAAGCT GACTCCGCCA AGCTCTGCCT CGCCTGCGAC 
    AAGCAAGTCC ACGTCGCCAA CCAACTCTTC GCCAAACACT TCAGGTCACT 
    TCTCTACGAC TCCTGCAACG AATCTCCCTC TTCCCTTTTC TGCGAGACTG 
    AAAGGCCTGT TCTTTGCCAG AACTGCGACT GGCAACACCA CACCGCCTCT 
    TCCTCCCT

AT2G47890.1

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47890.2

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR