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GT16342

CSHL Arabidopsis genetrap mutant lines

Original: GT16342

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16342

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 868414 [Map]; Strand: w
      • AT2G02970.1 - [+] show detail - GDA1/CD39 nucleoside phosphatase family protein
        Distance: -125; Region: promoter
      • AT2G02980.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16342 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACTGGA 
    TAACGATAAG CCTGTTATGT GATCATGACC CGATTGCAAA ATTAATAATC 
    AAATAACCCG ACCCGACCCG AATTGTAATT TAATAATTAG GTATAAAAAT 
    CGTAAAAGGC GCTACGACCA ATTTATTTTC CAATTTAATT TTGCTTTTTA 
    ATCTCTTTTA TTTTTATTTT TATTTCTATC ACCGAGAACG ACATCGGAGA 
    CTTGAGAGCG GCGGCGAGCT TCACCGGCGC TGGTTCACGG CGGCCCTCTC 
    AATCTCCAGT ATTCTCGGTT CAATAAAAGC TTCAAAAAAA GAAGAAAAAA 
    TCGAAAATTC ACGAAAATAT ATATTAATTT CAATTTTCCA TATTTGAATT 
    CTTCCAGATC TTATGATT

AT2G02970.1

Model type
Protein coding
Short Description
GDA1/CD39 nucleoside phosphatase family protein
Computational Description
GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14230.1); Has 1462 Blast hits to 1454 proteins in 233 species: Archae - 0; Bacteria - 37; Metazoa - 611; Fungi - 316; Plants - 335; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02980.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 39959 Blast hits to 14548 proteins in 281 species: Archae - 3; Bacteria - 7; Metazoa - 132; Fungi - 233; Plants - 38891; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Link
InterPro Scan - TAIR