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GT16344

CSHL Arabidopsis genetrap mutant lines

Original: GT16344

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16344

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89317 [Map]; Strand: c
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -719; Region: promoter
    Flanking Genome Sequence: GT16344 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGTCATAA 
    TATACTTCAT CTCACTCGAC CAAAAAGTAA AATTAAAGTT TGCAAAAAAA 
    ATTTTATTCA AAGAATCTAA CGGAAAAAAA CCGCTTAAAT TTTCTAGAAG 
    ATATTGCCAA ATGTTGATAA AATATCTGAT TAACCAAAAA GAAAATAACG 
    CATAGCGGTG AGCCGTTACA TTTCGACTAC AAAGTTATCA CATTAAAATC 
    ACCGCCAAAA ATTAGTAATT AATTAGATTA TATATATATA TTTAAGCTCA 
    TTTTATACAT TTATTTGTTT GTAAAATTAA TTTCTCATAG TATTAGATTG 
    AATGTTCATA TATTACAATT GGTATATACC ATAAGATAGT TGTGTGGTTC 
    GATGTAACAA AAATAAAATT AAACCAGAAG TAGAAAAAGT GAAGGAAAGG 
    GAATAACAAT GAAGAAGTTG AAAGATATGG AATGTTTTGC TTCACGCAAA 
    GAGCTTAACA CGAGACAAGT ACGCTCCATC GCGTTGCTTT GAAGTCTTTT 
    TTTTCTTCTT CTTCT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR