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GT16354

CSHL Arabidopsis genetrap mutant lines

Original: GT16354

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16354

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9102437 [Map]; Strand: w
      • AT3G24900.1 - [+] show detail - receptor like protein 39
        Distance: -600; Region: promoter
      • AT3G24927.1 - [+] show detail - expressed protein
        Distance: -650; Region: promoter
    Flanking Genome Sequence: GT16354 - 3-prime edge 
    GGTAGAGGTT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCCCTAT 
    GGCCCTATTA TCTGACGCTG TAACTCGCAA GTGTGCTCAT GATCCTCCAA 
    TGGAGAAAAT CATTCAAGTA AAAGAAAAAT GAAACTATCA TCTTCTTCAT 
    CTTTTTTCAA ATTCTCTTTA CCGTATATCT CCTAATCGGT TTAACGATCT 
    TGTGTTAGCT AAAACTATCA TCTTCTCCAT TATCTGACCA TTCACTTTGC 
    CTCGTCACCA ACTTCGAAAT TTGATACTCG ACAAACAAAT CAAAACAACG 
    CCAATTCTTC TTCGTCAAAG CACGTAGGGC TACAAAGGTC TCCAATACAC 
    CAACGTATCC AACGTGTTTG TCCTTATGCC AAGCTTATTC ATGTGATTTT 
    GAACATATAT GTGAGAACTT TCAAAGTGAT GTGGTTCCAA TCCAAGTTAT 
    ACTTTAGAAA AATTATCTAA CGTGGATTTC ACTTCTCCAA GCCCGAATAC 
    AAAGACGACT TCACTTACCT CTTAACTTCT TCCAAGTCAA TTTGTGCTCC 
    ACTATGCAAA ACTACTTCCT ATCTTTATTT ATACCAATCT TCTCTCTCAC 
    ATTTCTTATA CCAAAATCCA TTCTTTTCTT TCAAAGCTGT TTTCATCATG 
    TCTGAATT

AT3G24900.1

Model type
Protein coding
Short Description
receptor like protein 39
Computational Description
receptor like protein 39 (RLP39); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 41 (TAIR:AT3G25010.1); Has 100467 Blast hits to 28160 proteins in 1059 species: Archae - 45; Bacteria - 6030; Metazoa - 21147; Fungi - 1159; Plants - 64382; Viruses - 14; Other Eukaryotes - 7690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G24927.1

Model type
Pseudogene
Curator Summary
pseudogene of unknown protein
Computational Description
expressed protein
Link
InterPro Scan - TAIR